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3
votes
1
reply
1.1k
views
Can I normalize several samples with DESeq2 and then do pairwise comparisons?
deseq2 rna-seq
updated 2.6 years ago by 13k • written 2.6 years ago by ▴ 160
1
vote
1
reply
988
views
Do indexes made with cDNA fasta file contain only mRNAs?
ensembl kallisto
updated 2.7 years ago by ★ 7.8k • written 2.7 years ago by ▴ 160
0
votes
0
replies
650
views
How to analyze SCRNA seq data labelled with LARRY?
single lineage RNA tracing LARRY
updated 2.7 years ago by 154k • written 2.7 years ago by ▴ 160
0
votes
0
replies
2.8k
views
Comment: Comment: How to add gene entry to gtf file?
2.7 years ago by bioinfo ▴ 160
0
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0
replies
2.8k
views
Comment: Comment: How to add gene entry to gtf file?
2.7 years ago by bioinfo ▴ 160
0
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2
replies
2.8k
views
Comment: Comment: How to add gene entry to gtf file?
2.7 years ago by bioinfo ▴ 160
2
votes
5
replies
2.8k
views
How to add gene entry to gtf file?
single-cell cellranger
updated 2.7 years ago by 45k • written 2.7 years ago by ▴ 160
0
votes
0
replies
2.2k
views
Comment: Comment: How to interpret dotplot from enrichment analysis with gseapy?
2.7 years ago by bioinfo ▴ 160
0
votes
1
reply
2.2k
views
Comment: Comment: How to interpret dotplot from enrichment analysis with gseapy?
2.7 years ago by bioinfo ▴ 160
2
votes
5
replies
2.0k
views
Problem with tximport and plasmodium falciparum
tximport
2.7 years ago by bioinfo ▴ 160
2
votes
0
replies
2.0k
views
Answer: Answer: Problem with tximport and plasmodium falciparum
2.7 years ago by bioinfo ▴ 160
1
vote
3
replies
4.0k
views
How to make a UMAP for single cell data and color cells by average expression of a list of genes in scanpy?
single-cell scanpy RNA-seq UMAP
2.7 years ago by bioinfo ▴ 160
1
vote
0
replies
4.0k
views
Answer: Answer: How to make a UMAP for single cell data and color cells by average expression of
2.7 years ago by bioinfo ▴ 160
0
votes
0
replies
9.0k
views
Comment: Comment: Encountering error when loading scanpy?
2.7 years ago by bioinfo ▴ 160
1
vote
5
replies
2.2k
views
How to interpret dotplot from enrichment analysis with gseapy?
gsea single-cell gseapy enrichR
2.7 years ago by bioinfo ▴ 160
3
votes
4
replies
1.6k
views
How to remove a gene before making a cellranger reference?
fasta gtf cellranger scRNAseq
updated 2.7 years ago by 90k • written 2.7 years ago by ▴ 160
0
votes
2
replies
1.6k
views
Comment: Comment: How to remove a gene before making a cellranger reference?
2.7 years ago by bioinfo ▴ 160
0
votes
0
replies
1.0k
views
Comment: Comment: Do I need to merge files after downloading them from SRA?
2.7 years ago by bioinfo ▴ 160
1
vote
2
replies
1.0k
views
Do I need to merge files after downloading them from SRA?
rna-seq sra
2.7 years ago by bioinfo ▴ 160
15
votes
8
replies
9.0k
views
Encountering error when loading scanpy?
scanpy single-cell scRNA-seq
2.7 years ago by bioinfo ▴ 160
0
votes
0
replies
4.0k
views
Comment: Comment: How to make a UMAP for single cell data and color cells by average expression of
2.7 years ago by bioinfo ▴ 160
0
votes
0
replies
2.0k
views
Comment: Comment: Problem with tximport and plasmodium falciparum
2.7 years ago by bioinfo ▴ 160
0
votes
1
reply
2.0k
views
Comment: Comment: Problem with tximport and plasmodium falciparum
2.8 years ago by bioinfo ▴ 160
1
vote
0
replies
688
views
What is the difference between gseapy.prerank and gseapy.gsea?
gseapy gsea
2.8 years ago by bioinfo ▴ 160
3
votes
2
replies
976
views
Do I need to correct for sequencing depth in bulk RNA seq?
kallisto RNA-seq
updated 2.7 years ago by 45k • written 2.8 years ago by ▴ 160
0
votes
0
replies
887
views
How to adjust graph in scanpy?
scanpy single-cell RNA-seq
2.8 years ago by bioinfo ▴ 160
0
votes
0
replies
1.0k
views
How to analyze scRNA seq data with time points (Seurat/Pseudotime)?
monocle3 scRNA-seq pseudotime Seurat R
2.8 years ago by bioinfo ▴ 160
0
votes
0
replies
2.2k
views
Comment: Comment: How to perform scRNA seq analysis?
2.8 years ago by bioinfo ▴ 160
2
votes
2
replies
2.2k
views
How to perform scRNA seq analysis?
single-cell pseudobulk seurat
2.8 years ago by bioinfo ▴ 160
0
votes
0
replies
2.1k
views
Comment: Comment: Issues with chromosome file in kallisto
2.9 years ago by bioinfo ▴ 160
0
votes
1
reply
2.1k
views
Comment: Comment: Issues with chromosome file in kallisto
2.9 years ago by bioinfo ▴ 160
0
votes
0
replies
1.3k
views
Comment: Comment: Does the bootstrap in kallisto affect the BAM files?
2.9 years ago by bioinfo ▴ 160
3
votes
2
replies
1.3k
views
Does the bootstrap in kallisto affect the BAM files?
RNAseq kallisto BAM
2.9 years ago by bioinfo ▴ 160
1
vote
4
replies
2.1k
views
Issues with chromosome file in kallisto
kallisto
updated 2.9 years ago by ★ 7.8k • written 2.9 years ago by ▴ 160
1
vote
2
replies
1.5k
views
How to run UMAP on single cell results from 2 different runs?
single-cell seurat cellranger
updated 2.9 years ago by 5.2k • written 2.9 years ago by ▴ 160
0
votes
1
reply
1.4k
views
Comment: Comment: How to check gene properties (eg GC, repetitiveness, average expression level)?
3.0 years ago by bioinfo ▴ 160
0
votes
1
reply
2.3k
views
Comment: Comment: Can I demultiplex run based on i5 sequence?
3.0 years ago by bioinfo ▴ 160
0
votes
1
reply
2.3k
views
Comment: Comment: Can I demultiplex run based on i5 sequence?
3.0 years ago by bioinfo ▴ 160
1
vote
3
replies
1.4k
views
How to check gene properties (eg GC, repetitiveness, average expression level)?
deseq2 kallisto RNA-seq
updated 2.7 years ago by 45k • written 3.0 years ago by ▴ 160
0
votes
1
reply
2.3k
views
Comment: Comment: Can I demultiplex run based on i5 sequence?
3.0 years ago by bioinfo ▴ 160
0
votes
1
reply
2.3k
views
Comment: Comment: Can I demultiplex run based on i5 sequence?
3.0 years ago by bioinfo ▴ 160
0
votes
1
reply
2.3k
views
Comment: Comment: Can I demultiplex run based on i5 sequence?
3.0 years ago by bioinfo ▴ 160
0
votes
10
replies
2.3k
views
Can I demultiplex run based on i5 sequence?
demultiplexing bcl2fastq
updated 3.0 years ago by 154k • written 3.0 years ago by ▴ 160
0
votes
1
reply
5.5k
views
Comment: Comment: How to choose parameters for kallisto single end mode?
3.0 years ago by bioinfo ▴ 160
3
votes
13
replies
5.5k
views
How to choose parameters for kallisto single end mode?
kallisto RNA-seq
updated 2.5 years ago by 103k • written 3.0 years ago by ▴ 160
0
votes
0
replies
5.5k
views
Comment: Comment: How to choose parameters for kallisto single end mode?
3.0 years ago by bioinfo ▴ 160
7
votes
3
replies
4.1k
views
Should I merge my technical replicates for bulk RNA seq?
RNA-seq DESeq2
updated 2.7 years ago by 45k • written 3.1 years ago by ▴ 160
4
votes
4
replies
1.9k
views
Can I perform DE analysis with Seurat if I only have one sample per condition?
single RNA Seq cell seurat
updated 3.1 years ago by 5.2k • written 3.1 years ago by ▴ 160
0
votes
0
replies
603
views
How do I get estimated gene counts for a reference that contains GFP using Kallisto?
gene ensembl tximport kallisto
3.2 years ago by bioinfo ▴ 160
0
votes
0
replies
2.2k
views
Comment: Comment: How can I confirm that I installed bcl2fastq correctly?
3.2 years ago by bioinfo ▴ 160
168 results • Page 3 of 4
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