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251
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Comment: Comment: Problem merging plink files for somatic variants.
5 weeks ago by Palgrave ▴ 110
0
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2
replies
251
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Problem merging plink files for somatic variants.
plink somatic vcf
5 weeks ago by Palgrave ▴ 110
1
vote
1
reply
215
views
convert and merge somatic vcf file to plink format
gwas plink vcf
updated 5 weeks ago by 3.9k • written 5 weeks ago by ▴ 110
2
votes
1
reply
482
views
Overview of NCBI virus types (DNA, RNA, ssDNA etc...)
NCBI virus
updated 18 months ago by 141k • written 18 months ago by ▴ 110
0
votes
0
replies
1.1k
views
Bootstrap coxph model in R
coxph bootstrap R
2.3 years ago by Palgrave ▴ 110
1
vote
1
reply
624
views
GATK mutech2: Sample not found in BAM header
GATK
updated 2.5 years ago by ▴ 140 • written 2.5 years ago by ▴ 110
3
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0
replies
532
views
MARS-seq
MARS-Seq single-cell
2.5 years ago by Palgrave ▴ 110
0
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0
replies
555
views
STAR-aligner: genome load in a for-loop
STAR STAR-aligner
2.5 years ago by Palgrave ▴ 110
0
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0
replies
898
views
Comment: Comment: LOOCV on limma results
2.9 years ago by Palgrave ▴ 110
3
votes
2
replies
1.9k
views
hisat2 output from paired en reads.
hisat2 rna-seq
updated 3.0 years ago by ★ 2.2k • written 3.0 years ago by ▴ 110
1
vote
0
replies
716
views
Methylation frequency + and - strand
methylation Bismark
3.0 years ago by Palgrave ▴ 110
0
votes
1
reply
834
views
Different results in limma if group is removed
limma edgeR
updated 3.0 years ago by 87k • written 3.0 years ago by ▴ 110
0
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2
replies
898
views
LOOCV on limma results
loocv limma cross-validation
2.9 years ago by Palgrave ▴ 110
0
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1
reply
1.2k
views
Comment: Comment: extract unmapped reads from WGS data - which samtools parameters to choose
3.0 years ago by Palgrave ▴ 110
0
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4
replies
1.2k
views
extract unmapped reads from WGS data - which samtools parameters to choose
WGS Sequencing
updated 3.0 years ago by ▴ 590 • written 3.0 years ago by ▴ 110
0
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0
replies
9.8k
views
Comment: Comment: samtools multithreads
3.0 years ago by Palgrave ▴ 110
3
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4
replies
9.8k
views
samtools multithreads
samtools
3.0 years ago by Palgrave ▴ 110
0
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1
reply
3.6k
views
Comment: Comment: Get unmapped reads from cram/bam file
3.1 years ago by Palgrave ▴ 110
0
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1
reply
3.6k
views
Comment: Comment: Get unmapped reads from cram/bam file
3.1 years ago by Palgrave ▴ 110
2
votes
13
replies
3.6k
views
Get unmapped reads from cram/bam file
alignment
updated 3.1 years ago by 81k • written 3.1 years ago by ▴ 110
0
votes
1
reply
3.6k
views
Comment: Comment: Get unmapped reads from cram/bam file
3.1 years ago by Palgrave ▴ 110
0
votes
0
replies
3.6k
views
Comment: Comment: Get unmapped reads from cram/bam file
3.1 years ago by Palgrave ▴ 110
0
votes
1
reply
3.6k
views
Comment: Comment: Get unmapped reads from cram/bam file
3.1 years ago by Palgrave ▴ 110
0
votes
1
reply
1.7k
views
Dispersion and variance in RNA-seq explained.
RNA-Seq
updated 2.1 years ago by 43k • written 3.1 years ago by ▴ 110
0
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0
replies
794
views
cross validation output interpretation from survival analysis
survival R coxph cross-validation
updated 3.4 years ago by 87k • written 3.4 years ago by ▴ 110
0
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0
replies
1.7k
views
DimPlot: labels clusters with sample name
RNA-Seq sequencing R Seurat
updated 3.4 years ago by 43k • written 3.4 years ago by ▴ 110
0
votes
1
reply
714
views
Differentially expression from a TPM-normalized single-cell data frame
RNA-seq R next-gen-sequencing
updated 13 months ago by 43k • written 3.4 years ago by ▴ 110
2
votes
2
replies
2.4k
views
Convert ID for Human Gene 1.0 ST Array
R microarray affymetrix
updated 3.7 years ago by 141k • written 3.7 years ago by ▴ 110
1
vote
5
replies
965
views
Get read counts for reads overlapping exon-intron junction from STAR-output
STAR rna-seq
4.1 years ago by Palgrave ▴ 110
0
votes
1
reply
965
views
Comment: C: Get splice-read counts from STAR-output
4.1 years ago by Palgrave ▴ 110
0
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1
reply
965
views
Comment: C: Get splice-read counts from STAR-output
4.1 years ago by Palgrave ▴ 110
0
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1
reply
4.6k
views
Comment: C: Kaplan Meier curves in R
updated 4.3 years ago by 43k • written 8.2 years ago by ▴ 110
0
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0
replies
2.6k
views
Comment: C: Correlation between two expression matrices in blood and tumor
updated 4.3 years ago by 43k • written 8.2 years ago by ▴ 110
0
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1
reply
8.3k
views
Comment: A: Gene Expression Correlation
updated 4.3 years ago by 43k • written 8.2 years ago by ▴ 110
0
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1
reply
94k
views
Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
updated 4.4 years ago by 43k • written 8.2 years ago by ▴ 110
0
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1
reply
5.3k
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Comment: C: Align two fasta files against each other
4.7 years ago by Palgrave ▴ 110
0
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1
reply
1.4k
views
Comment: A: Find 3'UTRs for species
4.7 years ago by Palgrave ▴ 110
3
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7
replies
1.4k
views
Find 3'UTRs for species
Assembly alignment
updated 10 months ago by 43k • written 4.7 years ago by ▴ 110
4
votes
4
replies
5.3k
views
Align two fasta files against each other
alignment
4.7 years ago by Palgrave ▴ 110
0
votes
1
reply
1.4k
views
Comment: C: Find 3'UTRs for species
4.7 years ago by Palgrave ▴ 110
0
votes
1
reply
1.4k
views
Comment: A: Find 3'UTRs for species
4.7 years ago by Palgrave ▴ 110
0
votes
1
reply
94k
views
Comment: A: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
updated 7.0 years ago by 43k • written 8.3 years ago by ▴ 110
0
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0
replies
5.7k
views
Comment: C: Expression Matrix And Pearson'S Correlation Coefficient
8.2 years ago by Palgrave ▴ 110
0
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1
reply
94k
views
Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
8.2 years ago by Palgrave ▴ 110
2
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3
replies
4.6k
views
Kaplan Meier curves in R
RNA-Seq R survival
updated 20 months ago by 43k • written 8.2 years ago by ▴ 110
0
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1
reply
2.6k
views
Comment: C: Correlation between two expression matrices in blood and tumor
8.2 years ago by Palgrave ▴ 110
0
votes
1
reply
2.6k
views
Comment: C: Correlation between two expression matrices in blood and tumor
8.2 years ago by Palgrave ▴ 110
1
vote
7
replies
2.6k
views
Correlation between two expression matrices in blood and tumor
R rna-seq
updated 8.2 years ago by 104k • written 8.2 years ago by ▴ 110
1
vote
0
replies
1.7k
views
miRNA isomiR analysis using Biostrings
sequence R
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 110
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