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268
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Comment: Comment: Problem merging plink files for somatic variants.
7 weeks ago by Palgrave ▴ 110
0
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2
replies
268
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Problem merging plink files for somatic variants.
plink somatic vcf
7 weeks ago by Palgrave ▴ 110
1
vote
1
reply
230
views
convert and merge somatic vcf file to plink format
gwas plink vcf
updated 7 weeks ago by 3.9k • written 7 weeks ago by ▴ 110
2
votes
1
reply
496
views
Overview of NCBI virus types (DNA, RNA, ssDNA etc...)
NCBI virus
updated 19 months ago by 141k • written 19 months ago by ▴ 110
0
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0
replies
1.1k
views
Bootstrap coxph model in R
coxph bootstrap R
2.4 years ago by Palgrave ▴ 110
1
vote
1
reply
650
views
GATK mutech2: Sample not found in BAM header
GATK
updated 2.5 years ago by ▴ 140 • written 2.5 years ago by ▴ 110
3
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0
replies
538
views
MARS-seq
MARS-Seq single-cell
2.5 years ago by Palgrave ▴ 110
0
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0
replies
563
views
STAR-aligner: genome load in a for-loop
STAR STAR-aligner
2.6 years ago by Palgrave ▴ 110
0
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0
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911
views
Comment: Comment: LOOCV on limma results
3.0 years ago by Palgrave ▴ 110
3
votes
2
replies
1.9k
views
hisat2 output from paired en reads.
hisat2 rna-seq
updated 3.0 years ago by ★ 2.2k • written 3.0 years ago by ▴ 110
1
vote
0
replies
726
views
Methylation frequency + and - strand
methylation Bismark
3.0 years ago by Palgrave ▴ 110
0
votes
1
reply
841
views
Different results in limma if group is removed
limma edgeR
updated 3.1 years ago by 87k • written 3.1 years ago by ▴ 110
0
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2
replies
911
views
LOOCV on limma results
loocv limma cross-validation
3.0 years ago by Palgrave ▴ 110
0
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1
reply
1.2k
views
Comment: Comment: extract unmapped reads from WGS data - which samtools parameters to choose
3.1 years ago by Palgrave ▴ 110
0
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4
replies
1.2k
views
extract unmapped reads from WGS data - which samtools parameters to choose
WGS Sequencing
updated 3.1 years ago by ▴ 590 • written 3.1 years ago by ▴ 110
0
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0
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10.0k
views
Comment: Comment: samtools multithreads
3.1 years ago by Palgrave ▴ 110
3
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4
replies
10.0k
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samtools multithreads
samtools
3.1 years ago by Palgrave ▴ 110
0
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1
reply
3.7k
views
Comment: Comment: Get unmapped reads from cram/bam file
3.1 years ago by Palgrave ▴ 110
0
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1
reply
3.7k
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Comment: Comment: Get unmapped reads from cram/bam file
3.1 years ago by Palgrave ▴ 110
2
votes
13
replies
3.7k
views
Get unmapped reads from cram/bam file
alignment
updated 3.1 years ago by 82k • written 3.1 years ago by ▴ 110
0
votes
1
reply
3.7k
views
Comment: Comment: Get unmapped reads from cram/bam file
3.1 years ago by Palgrave ▴ 110
0
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0
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3.7k
views
Comment: Comment: Get unmapped reads from cram/bam file
3.1 years ago by Palgrave ▴ 110
0
votes
1
reply
3.7k
views
Comment: Comment: Get unmapped reads from cram/bam file
3.1 years ago by Palgrave ▴ 110
0
votes
1
reply
1.7k
views
Dispersion and variance in RNA-seq explained.
RNA-Seq
updated 2.2 years ago by 43k • written 3.1 years ago by ▴ 110
0
votes
0
replies
801
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cross validation output interpretation from survival analysis
survival R coxph cross-validation
updated 3.4 years ago by 87k • written 3.4 years ago by ▴ 110
0
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0
replies
1.7k
views
DimPlot: labels clusters with sample name
RNA-Seq sequencing R Seurat
updated 3.4 years ago by 43k • written 3.4 years ago by ▴ 110
0
votes
1
reply
724
views
Differentially expression from a TPM-normalized single-cell data frame
RNA-seq R next-gen-sequencing
updated 13 months ago by 43k • written 3.5 years ago by ▴ 110
2
votes
2
replies
2.5k
views
Convert ID for Human Gene 1.0 ST Array
R microarray affymetrix
updated 3.7 years ago by 141k • written 3.7 years ago by ▴ 110
1
vote
5
replies
984
views
Get read counts for reads overlapping exon-intron junction from STAR-output
STAR rna-seq
4.2 years ago by Palgrave ▴ 110
0
votes
1
reply
984
views
Comment: C: Get splice-read counts from STAR-output
4.2 years ago by Palgrave ▴ 110
0
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1
reply
984
views
Comment: C: Get splice-read counts from STAR-output
4.2 years ago by Palgrave ▴ 110
0
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1
reply
4.6k
views
Comment: C: Kaplan Meier curves in R
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 110
0
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0
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2.6k
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Comment: C: Correlation between two expression matrices in blood and tumor
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 110
0
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1
reply
8.3k
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Comment: A: Gene Expression Correlation
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 110
0
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1
reply
95k
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Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
updated 4.4 years ago by 43k • written 8.3 years ago by ▴ 110
0
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1
reply
5.3k
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Comment: C: Align two fasta files against each other
4.7 years ago by Palgrave ▴ 110
0
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1
reply
1.4k
views
Comment: A: Find 3'UTRs for species
4.7 years ago by Palgrave ▴ 110
3
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7
replies
1.4k
views
Find 3'UTRs for species
Assembly alignment
updated 11 months ago by 43k • written 4.7 years ago by ▴ 110
4
votes
4
replies
5.3k
views
Align two fasta files against each other
alignment
4.7 years ago by Palgrave ▴ 110
0
votes
1
reply
1.4k
views
Comment: C: Find 3'UTRs for species
4.7 years ago by Palgrave ▴ 110
0
votes
1
reply
1.4k
views
Comment: A: Find 3'UTRs for species
4.7 years ago by Palgrave ▴ 110
0
votes
1
reply
95k
views
Comment: A: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
updated 7.1 years ago by 43k • written 8.3 years ago by ▴ 110
0
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0
replies
5.7k
views
Comment: C: Expression Matrix And Pearson'S Correlation Coefficient
8.3 years ago by Palgrave ▴ 110
0
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1
reply
95k
views
Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
8.3 years ago by Palgrave ▴ 110
2
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3
replies
4.6k
views
Kaplan Meier curves in R
RNA-Seq R survival
updated 21 months ago by 43k • written 8.3 years ago by ▴ 110
0
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1
reply
2.6k
views
Comment: C: Correlation between two expression matrices in blood and tumor
8.3 years ago by Palgrave ▴ 110
0
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1
reply
2.6k
views
Comment: C: Correlation between two expression matrices in blood and tumor
8.3 years ago by Palgrave ▴ 110
1
vote
7
replies
2.6k
views
Correlation between two expression matrices in blood and tumor
R rna-seq
updated 8.3 years ago by 104k • written 8.3 years ago by ▴ 110
1
vote
0
replies
1.7k
views
miRNA isomiR analysis using Biostrings
sequence R
updated 2.5 years ago by 43k • written 9.9 years ago by ▴ 110
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