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questions
0
votes
2
replies
268
views
Problem merging plink files for somatic variants.
plink
somatic
vcf
7 weeks ago by
Palgrave
▴ 110
1
vote
1
reply
230
views
convert and merge somatic vcf file to plink format
gwas
plink
vcf
updated 7 weeks ago by
LChart
3.9k • written 7 weeks ago by
Palgrave
▴ 110
2
votes
1
reply
496
views
Overview of NCBI virus types (DNA, RNA, ssDNA etc...)
NCBI
virus
updated 19 months ago by
GenoMax
141k • written 19 months ago by
Palgrave
▴ 110
0
votes
0
replies
1.1k
views
Bootstrap coxph model in R
coxph
bootstrap
R
2.4 years ago by
Palgrave
▴ 110
1
vote
1
reply
648
views
GATK mutech2: Sample not found in BAM header
GATK
updated 2.5 years ago by
lethalfang
▴ 140 • written 2.5 years ago by
Palgrave
▴ 110
3
votes
0
replies
538
views
MARS-seq
MARS-Seq
single-cell
2.5 years ago by
Palgrave
▴ 110
0
votes
0
replies
563
views
STAR-aligner: genome load in a for-loop
STAR
STAR-aligner
2.6 years ago by
Palgrave
▴ 110
3
votes
2
replies
1.9k
views
hisat2 output from paired en reads.
hisat2
rna-seq
updated 3.0 years ago by
Zhilong Jia
★ 2.2k • written 3.0 years ago by
Palgrave
▴ 110
1
vote
0
replies
726
views
Methylation frequency + and - strand
methylation
Bismark
3.0 years ago by
Palgrave
▴ 110
0
votes
1
reply
841
views
Different results in limma if group is removed
limma
edgeR
updated 3.1 years ago by
Kevin Blighe
87k • written 3.1 years ago by
Palgrave
▴ 110
0
votes
2
replies
910
views
LOOCV on limma results
loocv
limma
cross-validation
3.0 years ago by
Palgrave
▴ 110
0
votes
4
replies
1.2k
views
extract unmapped reads from WGS data - which samtools parameters to choose
WGS
Sequencing
updated 3.1 years ago by
ponganta
▴ 590 • written 3.1 years ago by
Palgrave
▴ 110
3
votes
4
replies
10.0k
views
samtools multithreads
samtools
3.1 years ago by
Palgrave
▴ 110
2
votes
13
replies
3.7k
views
Get unmapped reads from cram/bam file
alignment
updated 3.1 years ago by
ATpoint
82k • written 3.1 years ago by
Palgrave
▴ 110
0
votes
1
reply
1.7k
views
Dispersion and variance in RNA-seq explained.
RNA-Seq
updated 2.2 years ago by
Ram
43k • written 3.1 years ago by
Palgrave
▴ 110
0
votes
0
replies
801
views
cross validation output interpretation from survival analysis
survival
R
coxph
cross-validation
updated 3.4 years ago by
Kevin Blighe
87k • written 3.4 years ago by
Palgrave
▴ 110
0
votes
0
replies
1.7k
views
DimPlot: labels clusters with sample name
RNA-Seq
sequencing
R
Seurat
updated 3.4 years ago by
Ram
43k • written 3.4 years ago by
Palgrave
▴ 110
0
votes
1
reply
724
views
Differentially expression from a TPM-normalized single-cell data frame
RNA-seq
R
next-gen-sequencing
updated 13 months ago by
Ram
43k • written 3.5 years ago by
Palgrave
▴ 110
2
votes
2
replies
2.5k
views
Convert ID for Human Gene 1.0 ST Array
R
microarray
affymetrix
updated 3.7 years ago by
GenoMax
141k • written 3.7 years ago by
Palgrave
▴ 110
1
vote
5
replies
981
views
Get read counts for reads overlapping exon-intron junction from STAR-output
STAR
rna-seq
4.2 years ago by
Palgrave
▴ 110
3
votes
7
replies
1.4k
views
Find 3'UTRs for species
Assembly
alignment
updated 11 months ago by
Ram
43k • written 4.7 years ago by
Palgrave
▴ 110
4
votes
4
replies
5.3k
views
Align two fasta files against each other
alignment
4.7 years ago by
Palgrave
▴ 110
2
votes
3
replies
4.6k
views
Kaplan Meier curves in R
RNA-Seq
R
survival
updated 21 months ago by
Ram
43k • written 8.3 years ago by
Palgrave
▴ 110
1
vote
7
replies
2.6k
views
Correlation between two expression matrices in blood and tumor
R
rna-seq
updated 8.3 years ago by
Devon Ryan
104k • written 8.3 years ago by
Palgrave
▴ 110
1
vote
0
replies
1.7k
views
miRNA isomiR analysis using Biostrings
sequence
R
updated 2.5 years ago by
Ram
43k • written 9.9 years ago by
Palgrave
▴ 110
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