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questions
0
votes
0
replies
1.6k
views
Resources for finding out the allele frequency of a SNV by subpopulation
SNP
Allele Frequency
MAF
subpopulation
7.7 years ago by
LauferVA
4.5k
0
votes
2
replies
2.1k
views
Is it necessary to have all 3 genotypes to report a significant expression quantitative trait locus?
eQTL
updated 7.8 years ago by
Biostar
20 • written 7.9 years ago by
LauferVA
4.5k
0
votes
1
reply
1.9k
views
Calculating LD between specific alleles even if they are not the minor alleles
linkage disequilibrium
matrix
calculation
7.9 years ago by
LauferVA
4.5k
0
votes
0
replies
1.3k
views
Estimating epigenetic missing heredity
missing hertability
epigenetics
7.9 years ago by
LauferVA
4.5k
4
votes
3
replies
2.3k
views
Adding gene diagram to output from snp.plotter
LD
heatmap
gene diagram
updated 8.0 years ago by
cannin
▴ 350 • written 8.0 years ago by
LauferVA
4.5k
1
vote
0
replies
3.0k
views
Locus Zoom issues no error but prints file with no LD information displayed
LocusZoom
LD
Linkage Disequilibrium
8.0 years ago by
LauferVA
4.5k
0
votes
0
replies
3.1k
views
Locus Zoom issuing an error in valid.viewport()
locus zoom
8.1 years ago by
LauferVA
4.5k
0
votes
0
replies
1.4k
views
Are there cases in which the association from a GWAS study has been shown to be caused by a SV or CNV?
GWAS
CNV
causal
missing heritablity
8.4 years ago by
LauferVA
4.5k
1
vote
1
reply
5.1k
views
Plink - resolving heterozygous haploid genotypes if an XY chromosome is already assigned in GWAS
Plink
GWAS
updated 8.5 years ago by
dgrover6
▴ 10 • written 8.5 years ago by
LauferVA
4.5k
1
vote
3
replies
1.6k
views
Return the Title and URL of ~100 pubmed queries to a flat file
pubmed
batch
query
8.5 years ago by
LauferVA
4.5k
0
votes
1
reply
1.4k
views
Input into GO in such a way as to not receive ambiguous identifier warnings
GO
gene symbol
HGNC
updated 8.5 years ago by
EagleEye
7.6k • written 8.5 years ago by
LauferVA
4.5k
11
votes
3
replies
5.5k
views
Is it valid to call this an "empirical p-value" ?
simulation testing
p-value
permutation testing
updated 8.6 years ago by
Devon Ryan
105k • written 8.6 years ago by
LauferVA
4.5k
0
votes
1
reply
2.9k
views
Making a standardized list of conversion of all kgp identifiers to RSids for the NHGRI GWAS catalog
kgp
rsid
conversion
SNP
8.6 years ago by
LauferVA
4.5k
0
votes
0
replies
1.3k
views
Help finding citation that SNPs whose allele frequency has changed much between ethnicities are more likely to be GWAS index SNPs?
GWAS
association
index
SNP
8.6 years ago by
LauferVA
4.5k
6
votes
3
replies
2.1k
views
Running 1.5M potentially different generalized linear models depending on distribution of read depth information to study CNV
CNV
GLM
read depth
updated 8.7 years ago by
Zev.Kronenberg
12k • written 8.7 years ago by
LauferVA
4.5k
0
votes
1
reply
2.0k
views
Generalization of the concept of LD to polyallelic variants and / or variants that are within SV and CNV events
linkage disequilibrium
LD
CNV
SV
SNV
8.8 years ago by
LauferVA
4.5k
1
vote
0
replies
1.7k
views
What software was used to produce Figure 1 of this manuscript
Figures
linkage disequilbrium
GWAS
8.8 years ago by
LauferVA
4.5k
7
votes
6
replies
4.3k
views
how can I get MAF stratified by subpopulation for ASW, or CEU and YRI
genetics
MAF
subpopulation
allele-frequency
updated 2.9 years ago by
Ram
44k • written 10.1 years ago by
LauferVA
4.5k
1
vote
0
replies
1.7k
views
How to prioritize candidate causal variation and isolate independent association signals in a family based study of catfish
GWAS
Causal Variant
Association
QFAM
Family
8.8 years ago by
LauferVA
4.5k
3
votes
2
replies
2.0k
views
Detecting fine population structure such as might confound a rare variant association study
confound
rare-variant
population
GWAS
substructure
updated 2.4 years ago by
Ram
44k • written 9.4 years ago by
LauferVA
4.5k
5
votes
5
replies
3.1k
views
Obtain sequences to test positive selection using dN/dS statistics?
positive-selection
evolution
dN-dS
updated 2.6 years ago by
Ram
44k • written 9.0 years ago by
LauferVA
4.5k
3
votes
1
reply
3.5k
views
PAMLX yn00 does not issue error message but prints empty files when asked for dN/dS statistics
dNdS
PAML
updated 2.5 years ago by
Ram
44k • written 9.1 years ago by
LauferVA
4.5k
4
votes
1
reply
2.4k
views
Formulating the best imputation strategy for multiple GWAS chips in an admixed population
GWAS
imputation
admixture
meta analysis
9.3 years ago by
LauferVA
4.5k
6
votes
8
replies
3.3k
views
List of causal variants for autoimmune diseases
autoimmune
SNP
GWAS
genetics
updated 2.2 years ago by
Ram
44k • written 9.9 years ago by
LauferVA
4.5k
0
votes
2
replies
2.2k
views
Finding public ChIP-seq data for various tissue types
ChIP-Seq
updated 22 months ago by
Ram
44k • written 9.3 years ago by
LauferVA
4.5k
0
votes
2
replies
3.5k
views
Odds Ratio Confidence Intervals in SNP Test
Confidence-Interval
OR
CI
SNPtest
updated 2.3 years ago by
Ram
44k • written 9.5 years ago by
LauferVA
4.5k
0
votes
0
replies
2.0k
views
How to find appropriate control regions for gene burden tests on T-cell enhancer regions
gene-burden
enhancer
control
9.6 years ago by
LauferVA
4.5k
0
votes
0
replies
1.6k
views
Theoretical problems using PCA to control for cases and controls with different ethnicity
GWAS
PCA
updated 2.1 years ago by
Ram
44k • written 9.6 years ago by
LauferVA
4.5k
0
votes
0
replies
1.9k
views
Most common method for looking at LD independent SNPs
Immunochip
GWAS
Bonferonni
IChip
LD
updated 2.1 years ago by
Ram
44k • written 9.7 years ago by
LauferVA
4.5k
0
votes
2
replies
1.9k
views
Genes with "AK#### or BC#####" in UCSC genome browser
UCSC
gene track
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
LauferVA
4.5k
4
votes
2
replies
4.0k
views
Using EPACTS to implement SKAT-O - question about ped files
SKAT
EPACTS
PED
updated 2.9 years ago by
Ram
44k • written 10.1 years ago by
LauferVA
4.5k
0
votes
0
replies
2.2k
views
Which HapMap Citation to cite if pulling information from dbSNP
MAF
hapmap
dbsnp
updated 2.7 years ago by
Ram
44k • written 9.9 years ago by
LauferVA
4.5k
9
votes
1
reply
5.8k
views
Rationale for including a certain number of PCs in a GWAS study?
PCA
Statistics
GWAS
updated 10.1 years ago by
Sam
★ 4.8k • written 10.1 years ago by
LauferVA
4.5k
0
votes
1
reply
2.2k
views
Getting colors when displaying .bed files in locuszoom1.3
bed
locuszoom
graph
updated 2.9 years ago by
Ram
44k • written 10.1 years ago by
LauferVA
4.5k
2
votes
2
replies
3.0k
views
Bonferonni Correction for mostly overlapping enhancers
statistics
bonferonni
enhancers
updated 2.9 years ago by
Ram
44k • written 10.1 years ago by
LauferVA
4.5k
6
votes
2
replies
2.6k
views
Options for generation of publication quality gene diagrams with annotation
VCF
NGS
Gene-Annotation
updated 3.1 years ago by
Ram
44k • written 10.4 years ago by
LauferVA
4.5k
86 results • Page
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