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Comment: C: No coverage in macs2 peak summit!
3.4 years ago by blur ▴ 280
0
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1
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1.6k
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Comment: A: No coverage in macs2 peak summit!
3.4 years ago by blur ▴ 280
0
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3
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1.6k
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Comment: C: No coverage in macs2 peak summit!
3.4 years ago by blur ▴ 280
0
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1
reply
830
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compare two groups of multiple bed files
bed bedtools
updated 13 months ago by 43k • written 3.5 years ago by ▴ 280
1
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1
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3.6k
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Comment: C: Cut & run - bowtie2 dovetail option
3.5 years ago by blur ▴ 280
5
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2
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3.6k
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Cut & run - bowtie2 dovetail option
cut and run dovetail bowtie2
updated 15 months ago by • 0 • written 3.5 years ago by ▴ 280
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1
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1.2k
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Comment: C: Trimmomatic Kseq and Bowtie --dovetail
3.5 years ago by blur ▴ 280
1
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1
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1.2k
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htseq-count without GTF?
FPKM count htseq htseq-count gtf
updated 3.5 years ago by 82k • written 3.5 years ago by ▴ 280
0
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0
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664
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How do I get a histone-to-gene table/map to correlate with genes?
histone
3.6 years ago by blur ▴ 280
0
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0
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843
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Comment: C: GFF3 transcript name
3.7 years ago by blur ▴ 280
0
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0
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843
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Comment: C: GFF3 transcript name
3.7 years ago by blur ▴ 280
1
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4
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843
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GFF3 transcript name
gff3 gff transcript resource
3.7 years ago by blur ▴ 280
1
vote
3
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2.3k
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R package or tool to draw peaks on chromosomes (like in UCSC)
R visualization ucsc
updated 3.7 years ago by ★ 3.4k • written 3.7 years ago by ▴ 280
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0
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2.3k
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Comment: C: R package or tool to draw peaks on chromosomes (like in UCSC)
3.7 years ago by blur ▴ 280
0
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0
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737
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Comment: C: MSA program that allows collpase of identical reads
3.7 years ago by blur ▴ 280
0
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0
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737
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Comment: C: MSA program that allows collpase of identical reads
3.7 years ago by blur ▴ 280
0
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3
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737
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MSA program that allows collpase of identical reads
MSA multi sequence alignmen collapse
updated 3.7 years ago by ★ 27k • written 3.7 years ago by ▴ 280
0
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0
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1.3k
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Is there a way to download fasta files from Repbase free?
repbase
3.7 years ago by blur ▴ 280
0
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0
replies
486
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Issue getting right strand in ccat
ccat peakranger chip-seq
3.8 years ago by blur ▴ 280
0
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1
reply
845
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Finding regulatory or structural elements
ChIP-Seq structural elements
updated 3.8 years ago by ★ 2.9k • written 3.8 years ago by ▴ 280
0
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0
replies
599
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How do I learn to do ribo_seq the right way?
ribo seq
3.9 years ago by blur ▴ 280
1
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1
reply
1.1k
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Centrimo from the MEME-suit --neg option
centrimo meme neg
3.9 years ago by blur ▴ 280
1
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0
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1.1k
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Answer: A: Centrimo from the MEME-suit --neg option
3.9 years ago by blur ▴ 280
0
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0
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1.1k
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Answer: A: Finding motifs strategy
3.9 years ago by blur ▴ 280
0
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0
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1.4k
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Comment: C: peak summit in macs not the highest point
3.9 years ago by blur ▴ 280
0
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1
reply
1.4k
views
Comment: C: peak summit in macs not the highest point
3.9 years ago by blur ▴ 280
0
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1
reply
1.4k
views
Comment: C: peak summit in macs not the highest point
3.9 years ago by blur ▴ 280
3
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7
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1.4k
views
peak summit in macs not the highest point
macs peak summit
3.9 years ago by blur ▴ 280
0
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0
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971
views
Answer: A: How can get overlap size in bedtools multi-intersect?
4.0 years ago by blur ▴ 280
0
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2
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971
views
How can get overlap size in bedtools multi-intersect?
bedtools multiintersect
4.0 years ago by blur ▴ 280
0
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0
replies
1.1k
views
Comment: C: ribosome profiling problems
4.2 years ago by blur ▴ 280
0
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1
reply
1.1k
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Comment: C: ribosome profiling problems
4.2 years ago by blur ▴ 280
1
vote
4
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1.1k
views
ribosome profiling problems
ribosome profiling
4.2 years ago by blur ▴ 280
0
votes
0
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698
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GTF to match transcriptome data in TopHat
TopHat transcriptome GTF
4.2 years ago by blur ▴ 280
11
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9
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6.6k
views
6 follow
How do I know if I have DNA contamination in RNA-seq data?
RNA-Seq contamination
updated 4.5 years ago by • 0 • written 5.2 years ago by ▴ 280
0
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0
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731
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Comment: C: Where can I find a list of mitochondrial tRNA locations?
4.8 years ago by blur ▴ 280
0
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0
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731
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Comment: C: Where can I find a list of mitochondrial tRNA locations?
4.8 years ago by blur ▴ 280
1
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5
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731
views
Where can I find a list of mitochondrial tRNA locations?
tRNAs
4.8 years ago by blur ▴ 280
1
vote
2
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842
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DB for small RNAs in plant genomes?
small RNA DB
4.8 years ago by blur ▴ 280
0
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0
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842
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Comment: C: DB for small RNAs in plant genomes?
4.8 years ago by blur ▴ 280
1
vote
3
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1.5k
views
high-throughput domain discovery
domain proteins
updated 5.1 years ago by ▴ 40 • written 6.3 years ago by ▴ 280
0
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1
reply
6.6k
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Comment: C: How do I know if I have DNA contamination in RNA-seq data?
5.2 years ago by blur ▴ 280
1
vote
5
replies
6.1k
views
bad quality in certain tiles according to "Per tile sequence quality" in FASTQC
fastqc Per tile sequence quality
5.2 years ago by blur ▴ 280
0
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1
reply
6.1k
views
Comment: C: bad quality in certain tiles according to "Per tile sequence quality" in FASTQC
5.2 years ago by blur ▴ 280
0
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1
reply
6.1k
views
Comment: C: bad quality in certain tiles according to "Per tile sequence quality" in FASTQC
5.2 years ago by blur ▴ 280
0
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0
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2.1k
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Comment: C: Filtering noise out of SAM file using CIGAR
5.4 years ago by blur ▴ 280
0
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1
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2.1k
views
Comment: C: Filtering noise out of SAM file using CIGAR
5.4 years ago by blur ▴ 280
0
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0
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3.3k
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Comment: C: RNA-seq alignment rate is too low.
5.4 years ago by blur ▴ 280
2
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10
replies
2.1k
views
Filtering noise out of SAM file using CIGAR
SAM CIGAR
updated 5.4 years ago by ★ 3.2k • written 5.4 years ago by ▴ 280
0
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1
reply
2.1k
views
Comment: C: Filtering noise out of SAM file using CIGAR
5.4 years ago by blur ▴ 280
206 results • Page 2 of 5
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