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questions
0
votes
0
replies
159
views
Saccharomyces cerevisiae orthologs in plants
database
orthologs
21 days ago by
dec986
▴ 370
1
vote
1
reply
258
views
How to quantify gaps in multiple sequence alignments
blast
alignment
updated 3 months ago by
Dunois
★ 2.5k • written 3 months ago by
dec986
▴ 370
0
votes
0
replies
298
views
Multiple sequence alignment: amino acid similarity
blast
alignment
4 months ago by
dec986
▴ 370
7
votes
7
replies
1.1k
views
How to use efetch to download genome/proteome/etc. at the command line?
esearch
ncbi
efetch
updated 6 months ago by
schlogl
▴ 160 • written 6 months ago by
dec986
▴ 370
1
vote
5
replies
700
views
how to make estimated proteome from genome?
proteome
genome
6 months ago by
dec986
▴ 370
3
votes
4
replies
641
views
Visualization of multiple sequence alignment quality
blastp
blast
msa
updated 7 months ago by
GenoMax
141k • written 7 months ago by
dec986
▴ 370
8
votes
5
replies
1.1k
views
What database would have a list of gene names and aliases for yeast?
yeast
updated 8 months ago by
Wayne
★ 2.0k • written 8 months ago by
dec986
▴ 370
0
votes
2
replies
494
views
Plotting multiple sequence alignments from tblastn
tblastn
visualization
blast
msa
8 months ago by
dec986
▴ 370
6
votes
6
replies
1.1k
views
How to get image of mutliple alignment sequence that is labeled by row?
blastp
blast
msa
updated 8 months ago by
GenoMax
141k • written 8 months ago by
dec986
▴ 370
3
votes
1
reply
581
views
where can I download blastp database for human?
blast
blastp
updated 9 months ago by
GenoMax
141k • written 9 months ago by
dec986
▴ 370
3
votes
1
reply
423
views
Saving results from yeastgenome.org blastp search
blast
blastp
updated 10 months ago by
GenoMax
141k • written 10 months ago by
dec986
▴ 370
1
vote
1
reply
598
views
using Firebrowser to identify disease type
firebrowser
14 months ago by
dec986
▴ 370
5
votes
9
replies
934
views
Public availability of de-identified patient data
literature
updated 18 months ago by
GenoMax
141k • written 18 months ago by
dec986
▴ 370
1
vote
5
replies
1.4k
views
plink logistic regression error
plink
updated 19 months ago by
chrchang523
10k • written 19 months ago by
dec986
▴ 370
4
votes
2
replies
683
views
PolyPhen for HG38
annovar
updated 20 months ago by
LauferVA
4.2k • written 20 months ago by
dec986
▴ 370
1
vote
6
replies
1.3k
views
GATK's selectVariants not outputting VCF
GATK
20 months ago by
dec986
▴ 370
0
votes
5
replies
1.3k
views
Cannot call haplotypes on bam
gatk
STAR
updated 20 months ago by
Shred
★ 1.4k • written 21 months ago by
dec986
▴ 370
5
votes
3
replies
3.5k
views
plink2 cannot make bed file
plink2
updated 21 months ago by
rsrivastava
• 0 • written 21 months ago by
dec986
▴ 370
0
votes
0
replies
594
views
"split chromosome" after sorting with bcftools
bcftools
plink
updated 10 months ago by
Ram
43k • written 21 months ago by
dec986
▴ 370
0
votes
0
replies
400
views
Eigenvalues and significance
pca
21 months ago by
dec986
▴ 370
2
votes
1
reply
804
views
Input problem with EIGENSTRAT
eigenstrat
updated 21 months ago by
4galaxy77
2.8k • written 21 months ago by
dec986
▴ 370
0
votes
0
replies
388
views
How to create data set for SNF?
SNF
22 months ago by
dec986
▴ 370
1
vote
8
replies
1.9k
views
admixture crashes without explanation
admixture
updated 22 months ago by
Ram
43k • written 23 months ago by
dec986
▴ 370
0
votes
4
replies
899
views
admixture mem error, but not out of RAM
admixture
23 months ago by
dec986
▴ 370
1
vote
2
replies
1.3k
views
Admixture: "PLINK Input file error"
plink
admixture
23 months ago by
dec986
▴ 370
2
votes
1
reply
1.1k
views
Bcftools equivalent of vcftools conversion to ped & map
bcftools
updated 23 months ago by
chrchang523
10k • written 23 months ago by
dec986
▴ 370
1
vote
3
replies
1.1k
views
Using admixture to estimate ancestry from a single VCF with no family information
admixture
updated 2.0 years ago by
4galaxy77
2.8k • written 2.0 years ago by
dec986
▴ 370
1
vote
5
replies
1.2k
views
How to estimate race/ethnicity from VCF?
ethnicity
2.0 years ago by
dec986
▴ 370
13
votes
8
replies
12k
views
7 follow
Building Dict File for GATK
java
gatk
updated 11 months ago by
DareDevil
★ 4.3k • written 4.3 years ago by
dec986
▴ 370
0
votes
2
replies
684
views
DB SNP, how to download database?
NIH
updated 13 months ago by
Ram
43k • written 2.1 years ago by
dec986
▴ 370
1
vote
20
replies
2.9k
views
7 follow
vcftools not ouputting log file when run from perl
vcftools
vcf
updated 2.2 years ago by
GabrielMontenegro
▴ 670 • written 4.4 years ago by
dec986
▴ 370
0
votes
0
replies
369
views
download allele frequency database in build 37?
liftover
2.3 years ago by
dec986
▴ 370
0
votes
0
replies
486
views
statistical power calculation for array data
statistical
calculations
power
2.3 years ago by
dec986
▴ 370
0
votes
0
replies
445
views
Cutoffs for Proxy Identification: D' and R^2
plink2
2.6 years ago by
dec986
▴ 370
0
votes
0
replies
516
views
Starting GWAS with Plink
GWAS
2.8 years ago by
dec986
▴ 370
3
votes
3
replies
2.3k
views
How to connect HLA alleles with rsID?
rsid
updated 2.9 years ago by
jr_ipd
• 0 • written 3.0 years ago by
dec986
▴ 370
0
votes
3
replies
2.2k
views
Correct command line syntax for plink2
plink2
updated 3.4 years ago by
chrchang523
10k • written 3.4 years ago by
dec986
▴ 370
2
votes
1
reply
1.6k
views
vcftools not outputting any file, and not giving any error message
vcftools
3.5 years ago by
dec986
▴ 370
2
votes
2
replies
1.1k
views
How to Interpret Chromosome Names from
genome
updated 3.5 years ago by
JC
13k • written 3.5 years ago by
dec986
▴ 370
1
vote
1
reply
1.8k
views
conversion of VCF to M3VCF using Minimac
minimac
updated 3.5 years ago by
awakumaya
▴ 30 • written 3.7 years ago by
dec986
▴ 370
4
votes
5
replies
1.7k
views
how to add reference alleles to VCF?
vcf
genome
updated 2.4 years ago by
Ram
43k • written 3.6 years ago by
dec986
▴ 370
0
votes
1
reply
873
views
how to split M3VCF by ID?
imputation
3.6 years ago by
dec986
▴ 370
3
votes
1
reply
1.6k
views
Plink altering VCF IDs
plink
updated 3.7 years ago by
chrchang523
10k • written 3.7 years ago by
dec986
▴ 370
2
votes
2
replies
1.7k
views
How to extract sample IDs from VCF into new VCF?
vcf
3.8 years ago by
dec986
▴ 370
6
votes
5
replies
1.6k
views
Can Plink 1.07 set-hh-missing output VCF?
plink
updated 3.8 years ago by
chrchang523
10k • written 3.8 years ago by
dec986
▴ 370
5
votes
3
replies
3.4k
views
Cannot find faToTwoBit download
fasta
2bit
updated 13 months ago by
Ram
43k • written 3.8 years ago by
dec986
▴ 370
0
votes
0
replies
738
views
How to create Survival Formula for Phenotype Data?
survival
3.9 years ago by
dec986
▴ 370
0
votes
4
replies
2.0k
views
bcftools cannot switch alt and ref alleles, IDs missing
bcftools
vcf
4.2 years ago by
dec986
▴ 370
0
votes
0
replies
726
views
break_blocks & GATK switch REF & ALT alleles
vcf
gatk
4.3 years ago by
dec986
▴ 370
0
votes
1
reply
1.3k
views
Break_blocks conversion of gvcf -> vcf
genome
vcf
4.3 years ago by
dec986
▴ 370
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