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Comment: C: Simplest output format of blast contamination check
6.2 years ago by morovatunc ▴ 550
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2.6k
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Comment: C: Simplest output format of blast contamination check
6.2 years ago by morovatunc ▴ 550
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2
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2.6k
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Comment: C: Simplest output format of blast contamination check
6.2 years ago by morovatunc ▴ 550
9
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8
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2.6k
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Simplest output format of blast contamination check
blast megablast
updated 6.2 years ago by 35k • written 6.2 years ago by ▴ 550
0
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0
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2.3k
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Bedtools -shuffle uniformly distributed bed regions
bedtools
updated 6.2 years ago by 20 • written 7.8 years ago by ▴ 550
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0
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1.4k
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Comment: C: Sub-typing patients by a single gene's expression in TCGA dataset.
6.2 years ago by morovatunc ▴ 550
3
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4
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1.4k
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Sub-typing patients by a single gene's expression in TCGA dataset.
RNA-Seq TCGA
updated 6.2 years ago by ★ 2.2k • written 6.2 years ago by ▴ 550
0
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1
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1.1k
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Designed primers with 3 bp mutations (codons) how to validate/visualize them?
blast bwa primer
6.2 years ago by morovatunc ▴ 550
0
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1
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1.6k
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Answer: A: detecting mutations in cancer samples belonging to the same cancer type
6.2 years ago by morovatunc ▴ 550
0
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0
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2.1k
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BWA aligner parameter tweaking to show primer mapping
bwa primer-design
6.3 years ago by morovatunc ▴ 550
4
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5
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6.4k
views
Chip-Seq Peak height difference between BED and BW file formats.
ChIP-Seq
updated 3.0 years ago by 43k • written 8.2 years ago by ▴ 550
0
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0
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5.9k
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Comment: C: Extract Cg Dinucleotides Coordinates From (Human) Genome
6.9 years ago by morovatunc ▴ 550
0
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0
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2.2k
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Comment: C: Regular Expression help for (bcf/vcf)tools filter manipulation
6.9 years ago by morovatunc ▴ 550
38
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19
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10k
views
10 follow
Forum: Kallisto New RNA-seq quantification method discussion
RNA-Seq
updated 12 months ago by 43k • written 8.0 years ago by ▴ 550
0
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0
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1.3k
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How should I compare multiple TF methylation percentages?
methylation encode TF
6.9 years ago by morovatunc ▴ 550
2
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2
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2.2k
views
Regular Expression help for (bcf/vcf)tools filter manipulation
vcftools bcftools
updated 6.9 years ago by ★ 2.8k • written 6.9 years ago by ▴ 550
1
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1
reply
2.3k
views
Comment: C: 1000g database with wrong variant annotation?
6.9 years ago by morovatunc ▴ 550
1
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1
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3.6k
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Answer: A: Does anybody success to download data using icgc-storage-client ?
6.9 years ago by morovatunc ▴ 550
3
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6
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1.5k
views
Could you suggest me a proper feature selection method for mixed type variable data?
machine learning
updated 7.0 years ago by • 0 • written 7.0 years ago by ▴ 550
0
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0
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1.5k
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Comment: C: Could you suggest me a proper feature selection method for mixed type variable d
7.0 years ago by morovatunc ▴ 550
0
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0
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9.6k
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Comment: C: Overlapping regions in a BedGraph file
7.0 years ago by morovatunc ▴ 550
0
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0
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11k
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Comment: C: pheatmap vs. manual hclust with different results
7.0 years ago by morovatunc ▴ 550
0
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1
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3.3k
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Comment: C: Somatic variant call
7.0 years ago by morovatunc ▴ 550
0
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0
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20k
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Comment: C: TCGA UUIDS to TCGA barcode (SampleID) in R
7.0 years ago by morovatunc ▴ 550
0
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0
replies
1.3k
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Comment: C: about Mapability and Blacklisted regions?
7.1 years ago by morovatunc ▴ 550
1
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0
replies
1.5k
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Comment: C: Varriant Annotation-exporting results
7.1 years ago by morovatunc ▴ 550
3
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2
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1.3k
views
about Mapability and Blacklisted regions?
mapability ucsc
updated 7.1 years ago by 104k • written 7.1 years ago by ▴ 550
0
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1
reply
1.5k
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Comment: C: Varriant Annotation-exporting results
7.1 years ago by morovatunc ▴ 550
1
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0
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1.4k
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Proving spesific TF binding locations have mutation enrichment than rest of the binding sites statistically
ChIP-Seq Stat
7.1 years ago by morovatunc ▴ 550
0
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0
replies
1.2k
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Checking TF binding region proximity mutational signature
mutation signature statistics
updated 7.1 years ago by 20 • written 7.1 years ago by ▴ 550
0
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0
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1.5k
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ENCODE DNAse 1 HyperSensitivity Data - Signal of unique reads vs Base Overlap Signal vs Raw Signal
ENCODE
7.1 years ago by morovatunc ▴ 550
0
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0
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2.1k
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Comment: C: Repeatmasker Annotation Descriptions
7.3 years ago by morovatunc ▴ 550
0
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1
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2.1k
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Comment: C: Repeatmasker Annotation Descriptions
7.3 years ago by morovatunc ▴ 550
1
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4
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2.1k
views
Repeatmasker Annotation Descriptions
repeatmasker UCSC
updated 7.3 years ago by 20 • written 7.3 years ago by ▴ 550
0
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0
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2.1k
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Comment: C: How analyse chip-exo paired read data and get BigWig or Peaks called?
7.3 years ago by morovatunc ▴ 550
0
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0
replies
2.1k
views
Comment: C: How analyse chip-exo paired read data and get BigWig or Peaks called?
7.3 years ago by morovatunc ▴ 550
0
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0
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1.6k
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Comment: C: How can I go over a bed region based on peak name in UCSC Genome Browser?
7.3 years ago by morovatunc ▴ 550
0
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1
reply
1.5k
views
Comment: C: How can I set a feature based on a single mutation in specific location?
7.3 years ago by morovatunc ▴ 550
0
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1
reply
1.5k
views
Comment: C: How can I set a feature based on a single mutation in specific location?
7.3 years ago by morovatunc ▴ 550
0
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1
reply
1.5k
views
Comment: C: How can I set a feature based on a single mutation in specific location?
7.3 years ago by morovatunc ▴ 550
0
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7
replies
1.5k
views
How can I set a feature based on a single mutation in specific location?
VCFTOOLS
7.3 years ago by morovatunc ▴ 550
0
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1
reply
1.6k
views
How can I go over a bed region based on peak name in UCSC Genome Browser?
UCSC BED
7.4 years ago by morovatunc ▴ 550
3
votes
5
replies
2.1k
views
How analyse chip-exo paired read data and get BigWig or Peaks called?
bedtools bed
updated 7.4 years ago by ▴ 580 • written 7.4 years ago by ▴ 550
0
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0
replies
1.5k
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Visualisation of Multiple Alignment Files (MAFs) with IGV
IGV UCSC
7.4 years ago by morovatunc ▴ 550
0
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0
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2.0k
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Visualisation of Binding Motifs on IGV (or any browser)
TF binding motif IGV
7.4 years ago by morovatunc ▴ 550
1
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1
reply
1.8k
views
Comment: C: Galaxy installation on AWS and charges
7.4 years ago by morovatunc ▴ 550
1
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0
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1.7k
views
Answer: A: CRISPER genome wide screen
7.4 years ago by morovatunc ▴ 550
4
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4
replies
3.1k
views
Is okay to apply ANOVA to Log2 transformed data ?
ANOVA Statistics
updated 7.5 years ago by ▴ 940 • written 7.5 years ago by ▴ 550
0
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0
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2.8k
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Comment: C: homer analysis help
7.6 years ago by morovatunc ▴ 550
0
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0
replies
4.2k
views
Comment: C: Merging vcf files ?
7.6 years ago by morovatunc ▴ 550
203 results • Page 2 of 5
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