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7
votes
7
replies
6.1k
views
6 follow
Get BUSCO gene descriptions
BUSCO de novo assembly
updated 20 months ago by 43k • written 8.1 years ago by ▴ 250
0
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1
reply
685
views
Comment: Comment: Asking for correction method for mRNA degradation bias
2.0 years ago by pbigbig ▴ 250
0
votes
3
replies
685
views
Asking for correction method for mRNA degradation bias
mRNA Isoform switching RNASeq degradation
2.0 years ago by pbigbig ▴ 250
0
votes
0
replies
816
views
Comment: Comment: Ranking genes based on importance rank from Random forest classifying model
2.4 years ago by pbigbig ▴ 250
1
vote
2
replies
816
views
Ranking genes based on importance rank from Random forest classifying model
selection random analysis feature forest transcriptome
2.4 years ago by pbigbig ▴ 250
0
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0
replies
1.2k
views
Comment: Comment: Pile up reads without reference?
2.4 years ago by pbigbig ▴ 250
0
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0
replies
1.2k
views
Comment: Comment: Pile up reads without reference?
2.4 years ago by pbigbig ▴ 250
0
votes
1
reply
1.2k
views
Comment: Comment: Pile up reads without reference?
2.4 years ago by pbigbig ▴ 250
1
vote
6
replies
1.2k
views
Pile up reads without reference?
mapping pileup visualization
2.4 years ago by pbigbig ▴ 250
0
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0
replies
2.1k
views
Comment: C: How do I specify single end Read in CIRCquant?
4.2 years ago by pbigbig ▴ 250
0
votes
0
replies
25k
views
Comment: C: Run multiple fastq.gz files with FastQC and yield single report?
updated 4.5 years ago by 43k • written 8.8 years ago by ▴ 250
0
votes
0
replies
4.1k
views
Comment: C: Problem: kmergenie has a minimum number of input of reads?
updated 4.5 years ago by 43k • written 8.8 years ago by ▴ 250
0
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0
replies
852
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Comment: C: miRNA quantification on custom database
4.7 years ago by pbigbig ▴ 250
0
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2
replies
852
views
miRNA quantification on custom database
miRNA RNA-Seq
4.7 years ago by pbigbig ▴ 250
1
vote
1
reply
6.1k
views
Comment: C: Get BUSCO gene descriptions
4.7 years ago by pbigbig ▴ 250
0
votes
1
reply
1.5k
views
Comment: C: Calculate scaling factor for RNAseq data
4.8 years ago by pbigbig ▴ 250
1
vote
6
replies
1.5k
views
Calculate scaling factor for RNAseq data
RNA-Seq normalization
updated 4.8 years ago by 14k • written 4.8 years ago by ▴ 250
0
votes
1
reply
1.5k
views
Comment: C: Calculate scaling factor for RNAseq data
4.8 years ago by pbigbig ▴ 250
0
votes
0
replies
16k
views
Comment: C: Clustering differences between heatmap.2 and pheatmap
4.9 years ago by pbigbig ▴ 250
0
votes
1
reply
5.4k
views
Comment: C: which matrix should be used to draw heatmap in RNAseq?
4.9 years ago by pbigbig ▴ 250
12
votes
5
replies
5.4k
views
which matrix should be used to draw heatmap in RNAseq?
RNAseq heatmap normalization
updated 2.1 years ago by ▴ 340 • written 4.9 years ago by ▴ 250
0
votes
1
reply
1.6k
views
Mapping both PE reads and Single-end reads into transcriptome
differential expression Trinity strand-specific
5.5 years ago by pbigbig ▴ 250
0
votes
0
replies
2.4k
views
Merging assemblies with GAM-NGS
platanus gam-ngs newbler
updated 21 months ago by 43k • written 8.3 years ago by ▴ 250
0
votes
0
replies
999
views
Comment: C: Masking short sequences between gaps in genome assembly
5.7 years ago by pbigbig ▴ 250
0
votes
2
replies
999
views
Masking short sequences between gaps in genome assembly
genome assembly masking
5.7 years ago by pbigbig ▴ 250
0
votes
1
reply
2.0k
views
extract SNPs corresponding position on BLAST subject sequence
SNP BLAST extract sequence
updated 6.4 years ago by 20 • written 6.6 years ago by ▴ 250
0
votes
0
replies
4.6k
views
Comment: C: Adding Domain Annotation Identifiers To Fasta Headers
6.6 years ago by pbigbig ▴ 250
1
vote
0
replies
3.1k
views
Comment: C: Merging BAM file before running GATK or merging vcf output
6.7 years ago by pbigbig ▴ 250
1
vote
2
replies
3.1k
views
Merging BAM file before running GATK or merging vcf output
GATK SNP vcf
updated 6.7 years ago by ★ 1.2k • written 6.7 years ago by ▴ 250
0
votes
1
reply
3.1k
views
Answer: A: How to run Interproscan on cluster ?
7.0 years ago by pbigbig ▴ 250
0
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0
replies
1.4k
views
Comment: C: Transcriptomes comparison and check for shared transcripts with arbitrary simila
7.1 years ago by pbigbig ▴ 250
0
votes
2
replies
1.4k
views
Transcriptomes comparison and check for shared transcripts with arbitrary similarity
rnaseq transcriptome de novo assembly
7.1 years ago by pbigbig ▴ 250
0
votes
0
replies
2.5k
views
Comment: C: Confusion regarding Trinity analyze_diff_expr.pl
7.3 years ago by pbigbig ▴ 250
1
vote
2
replies
2.5k
views
Confusion regarding Trinity analyze_diff_expr.pl
Trinity Differential expression transcriptome
updated 7.3 years ago by ★ 3.4k • written 7.4 years ago by ▴ 250
1
vote
1
reply
12k
views
Comment: C: GC content calculation
7.4 years ago by pbigbig ▴ 250
20
votes
16
replies
12k
views
GC content calculation
GC content trinity transcriptome
updated 7.4 years ago by 20k • written 7.4 years ago by ▴ 250
1
vote
0
replies
12k
views
Comment: C: GC content calculation
7.4 years ago by pbigbig ▴ 250
0
votes
0
replies
12k
views
Comment: C: GC content calculation
7.4 years ago by pbigbig ▴ 250
0
votes
1
reply
2.0k
views
Comment: C: Gene Set Enrichment Analisys on Bioconductor?
7.4 years ago by pbigbig ▴ 250
1
vote
0
replies
6.7k
views
Comment: C: Tools for categorize COG/KOG list
7.5 years ago by pbigbig ▴ 250
6
votes
2
replies
6.7k
views
Tools for categorize COG/KOG list
KOGs COGs
updated 7.5 years ago by ★ 3.4k • written 7.5 years ago by ▴ 250
0
votes
1
reply
8.2k
views
Comment: C: Using COG database
7.5 years ago by pbigbig ▴ 250
0
votes
0
replies
3.8k
views
Comment: C: Cannot download gi list from NCBI protein
7.5 years ago by pbigbig ▴ 250
6
votes
12
replies
3.8k
views
Cannot download gi list from NCBI protein
ncbi nr
7.5 years ago by pbigbig ▴ 250
0
votes
0
replies
3.8k
views
Comment: C: Cannot download gi list from NCBI protein
7.5 years ago by pbigbig ▴ 250
0
votes
0
replies
3.8k
views
Comment: C: Cannot download gi list from NCBI protein
7.5 years ago by pbigbig ▴ 250
0
votes
1
reply
3.8k
views
Comment: C: Cannot download gi list from NCBI protein
7.5 years ago by pbigbig ▴ 250
0
votes
0
replies
8.6k
views
Comment: C: Extracting ids of a cluster in heatmap
7.6 years ago by pbigbig ▴ 250
0
votes
0
replies
8.6k
views
Comment: C: Extracting ids of a cluster in heatmap
7.6 years ago by pbigbig ▴ 250
3
votes
4
replies
8.6k
views
Extracting ids of a cluster in heatmap
pheatmap heatmap RNAseq
updated 7.6 years ago by 13k • written 7.6 years ago by ▴ 250
106 results • Page 1 of 3
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