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1
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3
replies
586
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Conflicting sequences between Genome Browser and NCBI (reference hg19).
NGS amino-acid
updated 15 months ago by 43k • written 15 months ago by ▴ 180
0
votes
1
reply
537
views
How to evaluate batch-correction bias in expression data?
batch r normalization data correction methylation
updated 20 months ago by 82k • written 20 months ago by ▴ 180
4
votes
3
replies
723
views
DNA sequencing from cord blood stem cells
NGS stemcell germline GATK
updated 21 months ago by ★ 1.9k • written 21 months ago by ▴ 180
4
votes
1
reply
1.8k
views
Are probes flagged as cross-reactive on Illumina's Methylation 450K still flagged on the EPIC methylation array?
illumina microarrays methylation
updated 2.4 years ago by ★ 2.0k • written 4.6 years ago by ▴ 180
1
vote
4
replies
1.2k
views
NGS/GATK pipeline returns too many variants
NGS WES GATK Mutect
updated 5 weeks ago by • 0 • written 3.2 years ago by ▴ 180
4
votes
4
replies
3.7k
views
NMF not working for identifying mutational signature
NMF mutational signature ranking SNP matrix
updated 3.8 years ago by • 0 • written 5.5 years ago by ▴ 180
0
votes
3
replies
1.2k
views
Retrieving multiple regions (from a list) in a bam file and outputing as a table
WES SNP data frame
4.1 years ago by dodausp ▴ 180
1
vote
4
replies
791
views
Run RNA-seq analysis with selected targets
RNA-Seq alignment cufflinks
4.2 years ago by dodausp ▴ 180
0
votes
0
replies
690
views
RNA-seq assembly data not matching reference (cufflinks)
RNA-Seq alignment assembly
4.2 years ago by dodausp ▴ 180
2
votes
3
replies
1.2k
views
How to perform iteration task inside a docker image (RNA-seq analysis)
RNA-Seq quantification docker
updated 4.2 years ago by ★ 1.3k • written 4.2 years ago by ▴ 180
1
vote
2
replies
773
views
How to compare sequencing data from same sample, but from different methods?
sequencing comparison
4.3 years ago by dodausp ▴ 180
1
vote
5
replies
1.6k
views
How to use ExAC/gnomAD without chrN_random?
sequencing variant calling SNP ExAc
4.4 years ago by dodausp ▴ 180
0
votes
0
replies
859
views
Making a contrast matrix with multiple co-variates for differential expression analysis
R limma differential expression linear model
4.6 years ago by dodausp ▴ 180
1
vote
3
replies
1.6k
views
Finding the best combination of covarites in a multivariate linear regression
gene expression overall survival linear model R
4.9 years ago by dodausp ▴ 180
6
votes
9
replies
2.0k
views
Exploring association between genes by their expression
gene expression correlation R linear model
4.9 years ago by dodausp ▴ 180
14
votes
7
replies
6.4k
views
Performing univariate and multivariate logistic regression in gene expression data
gene expression logistic regression R Affymetrix
updated 2.8 years ago by 87k • written 5.1 years ago by ▴ 180
1
vote
1
reply
1.2k
views
How to find true mutations in tumor by removing the background from matched sample?
exome-seq SNP normalization R pipeline
updated 5.4 years ago by ★ 3.4k • written 5.4 years ago by ▴ 180
4
votes
3
replies
1.1k
views
Drug interaction not running in MAFtools
SNP exome-seq MAFtools R
5.4 years ago by dodausp ▴ 180
4
votes
3
replies
1.4k
views
Retrieving miRNA data from Firehose by using RTCGAToolbox
Firehose miRNA RTCGAToolbox R
updated 5.4 years ago by 11k • written 5.4 years ago by ▴ 180
3
votes
2
replies
1.1k
views
Adding unique index or names to merged data frames
SNP merge index TCGA sequencing
updated 5.4 years ago by 3.9k • written 5.4 years ago by ▴ 180
1
vote
0
replies
1.1k
views
Dealing with C>T technical issues (from FFPE samples) in SNP analysis
SNP base deamination FFPE mutational signature
5.5 years ago by dodausp ▴ 180
7
votes
5
replies
1.6k
views
Extracting a specific string pattern from a list of objects
R string subsetting data TCGA SNP
updated 5.5 years ago by ▴ 20 • written 5.5 years ago by ▴ 180
5
votes
3
replies
5.7k
views
Biobase not running in R 3.5.0
R Biobase
5.9 years ago by dodausp ▴ 180
1
vote
1
reply
2.2k
views
How to set the control group in microarray analysis from illumina data?
illumina beadarray R directhyb limma
updated 20 months ago by 43k • written 8.5 years ago by ▴ 180
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