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8
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5
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6.8k
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Combine a directory of GVCF files with gatk CombineGVCFs
gatk combinegvcfs gvcf
updated 8 weeks ago by ★ 4.4k • written 3.8 years ago by ▴ 210
3
votes
6
replies
3.0k
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6 follow
minimap2 gets killed, but it doesn't explain why
minimap2
updated 4 months ago by 3.4k • written 19 months ago by ▴ 210
0
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0
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400
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Demultiplexing asymmetrically barcoded reads from multiplex amplicon nanopore sequencing
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7 months ago by michael.flower.14 ▴ 210
0
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Install PacBio lima via conda fails
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updated 11 months ago by 8.0k • written 11 months ago by ▴ 210
0
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0
replies
1.1k
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Comment: Comment: Install PacBio lima via conda fails
11 months ago by michael.flower.14 ▴ 210
0
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1
reply
933
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Comment: Comment: Filtering reads that map to both references
16 months ago by michael.flower.14 ▴ 210
0
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933
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Filtering reads that map to both references
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updated 16 months ago by ★ 1.9k • written 16 months ago by ▴ 210
1
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updated 17 months ago by 154k • written 22 months ago by ▴ 210
1
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updated 17 months ago by 56k • written 17 months ago by ▴ 210
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Comment: Comment: minimap2 gets killed, but it doesn't explain why
19 months ago by michael.flower.14 ▴ 210
0
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1
reply
509
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samsift can't find the AS tag to filter a bam file generated using bowtie2
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updated 16 months ago by 166k • written 19 months ago by ▴ 210
0
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1
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1.0k
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Comment: Comment: How do you install ExpansionHunterDenovo on a Mac?
19 months ago by michael.flower.14 ▴ 210
0
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How do you install ExpansionHunterDenovo on a Mac?
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updated 19 months ago by 45k • written 19 months ago by ▴ 210
0
votes
1
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809
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picard CreateSequenceDictionary errors when trying to make a .dict file
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updated 19 months ago by 8.0k • written 19 months ago by ▴ 210
0
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3.6k
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Comment: Comment: jellyfish installed in conda, but 'command not found' when I try to run it
19 months ago by michael.flower.14 ▴ 210
2
votes
14
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3.6k
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jellyfish installed in conda, but 'command not found' when I try to run it
jellyfish conda
updated 19 months ago by 22k • written 19 months ago by ▴ 210
0
votes
0
replies
3.6k
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Comment: Comment: jellyfish installed in conda, but 'command not found' when I try to run it
19 months ago by michael.flower.14 ▴ 210
0
votes
1
reply
3.6k
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Comment: Comment: jellyfish installed in conda, but 'command not found' when I try to run it
19 months ago by michael.flower.14 ▴ 210
0
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0
replies
3.6k
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Comment: Comment: jellyfish installed in conda, but 'command not found' when I try to run it
19 months ago by michael.flower.14 ▴ 210
0
votes
1
reply
3.6k
views
Comment: Comment: jellyfish installed in conda, but 'command not found' when I try to run it
19 months ago by michael.flower.14 ▴ 210
0
votes
1
reply
3.6k
views
Comment: Comment: jellyfish installed in conda, but 'command not found' when I try to run it
19 months ago by michael.flower.14 ▴ 210
0
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2.7k
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Consensus sequence calling with normalisation of indels
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updated 2.8 years ago by ★ 1.3k • written 3.8 years ago by ▴ 210
9
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updated 2.8 years ago by 45k • written 3.2 years ago by ▴ 210
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updated 3.5 years ago by • 0 • written 3.9 years ago by ▴ 210
0
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updated 2.3 years ago by 45k • written 3.7 years ago by ▴ 210
0
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0
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1.5k
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Comment: Comment: gatk CombineGVCFs using argument file with spaces in the path
3.8 years ago by michael.flower.14 ▴ 210
4
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1.6k
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Get wget to download only new items from a list
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updated 3.8 years ago by 45k • written 3.8 years ago by ▴ 210
2
votes
0
replies
1.6k
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Answer: Answer: Get wget to download only new items from a list
3.8 years ago by michael.flower.14 ▴ 210
1
vote
2
replies
1.5k
views
gatk CombineGVCFs using argument file with spaces in the path
CombineGVCFs spaces gatk
3.8 years ago by michael.flower.14 ▴ 210
10
votes
12
replies
3.8k
views
Screen processes continue to run but can't find the original screen
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updated 3.8 years ago by ★ 3.3k • written 3.8 years ago by ▴ 210
3
votes
0
replies
3.8k
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Comment: Comment: Screen processes continue to run but can't find the original screen
3.8 years ago by michael.flower.14 ▴ 210
10
votes
3
replies
1.5k
views
Basename the contents of a file
basename Linux
updated 3.8 years ago by 21k • written 3.8 years ago by ▴ 210
0
votes
1
reply
1.6k
views
Comment: Comment: Get wget to download only new items from a list
3.8 years ago by michael.flower.14 ▴ 210
0
votes
0
replies
3.9k
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Comment: Comment: Extract a gene region from a whole genome cram file from 1000 genomes
3.8 years ago by michael.flower.14 ▴ 210
0
votes
1
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3.9k
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Comment: Comment: Extract a gene region from a whole genome cram file from 1000 genomes
3.8 years ago by michael.flower.14 ▴ 210
0
votes
1
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3.9k
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Comment: Comment: Extract a gene region from a whole genome cram file from 1000 genomes
3.8 years ago by michael.flower.14 ▴ 210
0
votes
1
reply
3.9k
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Comment: Comment: Extract a gene region from a whole genome cram file from 1000 genomes
3.8 years ago by michael.flower.14 ▴ 210
0
votes
1
reply
3.9k
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Comment: Comment: Extract a gene region from a whole genome cram file from 1000 genomes
3.8 years ago by michael.flower.14 ▴ 210
0
votes
1
reply
3.9k
views
Comment: Comment: Extract a gene region from a whole genome cram file from 1000 genomes
3.8 years ago by michael.flower.14 ▴ 210
6
votes
10
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3.9k
views
Extract a gene region from a whole genome cram file from 1000 genomes
samtools cram bam
3.8 years ago by michael.flower.14 ▴ 210
0
votes
2
replies
3.8k
views
Comment: Comment: Screen processes continue to run but can't find the original screen
3.8 years ago by michael.flower.14 ▴ 210
0
votes
0
replies
3.8k
views
Comment: Comment: Screen processes continue to run but can't find the original screen
3.8 years ago by michael.flower.14 ▴ 210
0
votes
1
reply
3.8k
views
Comment: Comment: Screen processes continue to run but can't find the original screen
3.8 years ago by michael.flower.14 ▴ 210
0
votes
0
replies
3.8k
views
Comment: Comment: Screen processes continue to run but can't find the original screen
3.8 years ago by michael.flower.14 ▴ 210
0
votes
2
replies
2.4k
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Installing VEP in conda
vep conda
updated 3.4 years ago by ▴ 210 • written 3.8 years ago by ▴ 210
0
votes
0
replies
6.8k
views
Comment: Comment: Combine a directory of GVCF files with gatk CombineGVCFs
3.8 years ago by michael.flower.14 ▴ 210
0
votes
1
reply
2.3k
views
Comment: Comment: gatk CombineGVCFs output contains only one column of genotypes
updated 3.8 years ago by 166k • written 3.8 years ago by ▴ 210
0
votes
0
replies
2.3k
views
Comment: Comment: gatk CombineGVCFs output contains only one column of genotypes
3.8 years ago by michael.flower.14 ▴ 210
0
votes
5
replies
2.3k
views
gatk CombineGVCFs output contains only one column of genotypes
combingvcfs gatk
updated 3.8 years ago by 166k • written 3.8 years ago by ▴ 210
0
votes
1
reply
6.8k
views
Comment: Comment: Combine a directory of GVCF files with gatk CombineGVCFs
3.8 years ago by michael.flower.14 ▴ 210
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