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Bam output of deduplication using UMItools
flagstat samtools RNA-seq UMItools bam dedup
updated 2.3 years ago by 45k • written 5.4 years ago by ▴ 50
0
votes
2
replies
1.3k
views
memory problem runnig multiqc --interactive
RNA-Seq multiqc
updated 5.4 years ago by 152k • written 5.4 years ago by ▴ 50
4
votes
7
replies
1.5k
views
High number of reads with the incorrect strand designation.
picard CollectRnaSeqMetrics RNA-Seq rna-seq Picard
5.4 years ago by Ati ▴ 50
2
votes
4
replies
3.1k
views
Deduplication using UMItools
RNA-Seq bam umitools duplication Picard
updated 5.4 years ago by 105k • written 5.4 years ago by ▴ 50
1
vote
15
replies
1.9k
views
Create txt file in a for loop
bash loop linux
updated 5.5 years ago by ▴ 140 • written 5.5 years ago by ▴ 50
2
votes
1
reply
1.5k
views
UMI on the fastq header
UMI RNA-Seq umi-tools fastq illumina
5.5 years ago by Ati ▴ 50
0
votes
3
replies
2.9k
views
How to calculate the shortest path between each pairs of genes in WGCNA
wgcna R gene co-expression analysis
updated 6.4 years ago by 8.4k • written 6.4 years ago by ▴ 50
3
votes
10
replies
4.6k
views
How to annotate positions using biomaRt R package?
r biomart
updated 2.2 years ago by 45k • written 9.3 years ago by ▴ 50
3
votes
4
replies
2.3k
views
Motifs data base
RNA-Seq Motifs DNA DREME
updated 9.1 years ago by ▴ 140 • written 9.1 years ago by ▴ 50
2
votes
6
replies
2.3k
views
Co-variants in differential expression analysis
RNA-Seq sequencing DE edgeR Voom
9.1 years ago by Ati ▴ 50
1
vote
3
replies
2.8k
views
bigwig file in UCSC custom track
UCSC bigwig RNA-Seq sequencing
updated 9.2 years ago by 11k • written 9.2 years ago by ▴ 50
0
votes
3
replies
1.9k
views
How to interprate edgeR result for different comparison
RNA-Seq edgeR R next-gen
updated 9.2 years ago by 5.8k • written 9.2 years ago by ▴ 50
2
votes
4
replies
2.4k
views
How to get sequence using masked repeats?
UCSC sequence
9.3 years ago by Ati ▴ 50
1
vote
2
replies
2.8k
views
Pathway analysis using R
RNA-Seq R
updated 9.3 years ago by ★ 5.2k • written 9.3 years ago by ▴ 50
1
vote
2
replies
3.4k
views
Convert ensembl gene ID
RNA-Seq Ensembl
updated 2.9 years ago by 45k • written 9.3 years ago by ▴ 50
9
votes
7
replies
24k
views
Bed to BedGraph
RNA-Seq DaPars bedgraph bed
updated 2.9 years ago by 45k • written 9.4 years ago by ▴ 50
2
votes
1
reply
12k
views
how to download gene annotation bed file from ensembl?
ensembl RNA-Seq genome ucsc
updated 2.2 years ago by 45k • written 9.4 years ago by ▴ 50
5
votes
4
replies
4.7k
views
How to download intronic positions from Ensembl
genome ensembl
updated 9.4 years ago by ★ 1.2k • written 9.4 years ago by ▴ 50
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