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0
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0
replies
463
views
Extracting list of mutations from .tsv file and arrange them in protein specific with binary 0 (Absent) and 1 (Present) values
bash
scripting
awk
Python
2.5 years ago by
k.kathirvel93
▴ 310
1
vote
3
replies
810
views
Merge two .fastq files from two different lane
loop
NGS
merge
fastq
cat
updated 2.8 years ago by
GenoMax
146k • written 2.8 years ago by
k.kathirvel93
▴ 310
1
vote
4
replies
1.2k
views
Where I can get pipeline for covid genome assembly?
pipeline
assembly
Covid
genome
updated 2.8 years ago by
Friederike
9.0k • written 2.8 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
817
views
How to obtain consensus fasta sequence from fasta file converted from BAM file?
Assembly
fasta
BAMtofasta
updated 2.8 years ago by
cpad0112
21k • written 2.8 years ago by
k.kathirvel93
▴ 310
0
votes
0
replies
812
views
Comment:
Comment: Bowtie BAM to Fasta extraction: Only mapped reads in single contig
2.8 years ago by
k.kathirvel93
▴ 310
0
votes
2
replies
812
views
Bowtie BAM to Fasta extraction: Only mapped reads in single contig
genome
BAM
fasta
assembly
Covid
2.8 years ago by
k.kathirvel93
▴ 310
0
votes
0
replies
3.2k
views
Comment:
Comment: How can i get gene name instead of gene ID from prepDE.py after STRINGtie?
3.4 years ago by
k.kathirvel93
▴ 310
8
votes
10
replies
2.9k
views
How to remove sequence reads contains more than 1 X from multifasta file?
sequence
sequencing
updated 4.5 years ago by
manojkumarbioinfo
▴ 100 • written 4.5 years ago by
k.kathirvel93
▴ 310
0
votes
2
replies
2.9k
views
Comment:
C: How to remove sequence reads contains more than 1 X from multifasta file?
4.5 years ago by
k.kathirvel93
▴ 310
0
votes
0
replies
2.9k
views
Comment:
C: How to remove sequence reads contains more than 1 X from multifasta file?
4.5 years ago by
k.kathirvel93
▴ 310
1
vote
4
replies
2.9k
views
Phylogenetic tree construction from MAFFT aligned large genome dataset ?
alignment
sequence
genome
updated 4.5 years ago by
Anand Rao
▴ 640 • written 4.5 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
1.6k
views
Comment:
C: how to remove specific sequences from multi-fasta file which contains N ?
4.5 years ago by
k.kathirvel93
▴ 310
0
votes
3
replies
1.6k
views
how to remove specific sequences from multi-fasta file which contains N ?
genome
sequencing
sequence
alignment
4.5 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
471
views
extract only reads repeated more than 10 times from BLASTp excel sheet output
Assembly
alignment
sequence
4.6 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
3.0k
views
Comment:
C: How to extract sequences from multi fasta file, which contains specific primers?
4.6 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
3.0k
views
Comment:
C: How to extract sequences from multi fasta file, which contains specific primers?
4.6 years ago by
k.kathirvel93
▴ 310
3
votes
2
replies
1.7k
views
Sort header from the multifasta sequnce file into only gene name
genome
alignment
sequencing
sequence
gene
updated 4.6 years ago by
gayachit
▴ 200 • written 4.6 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
3.0k
views
Comment:
C: How to extract sequences from multi fasta file, which contains specific primers?
4.6 years ago by
k.kathirvel93
▴ 310
4
votes
7
replies
3.0k
views
How to extract sequences from multi fasta file, which contains specific primers?
Assembly
genome
next-gen
sequencing
sequence
updated 4.6 years ago by
karl.stamm
4.1k • written 4.6 years ago by
k.kathirvel93
▴ 310
0
votes
0
replies
682
views
Can anyone suggest me "How to predict smallRNAs from p.aeruginosa whole genome data"?
genome
next-gen
sequencing
sequence
updated 5.5 years ago by
Biostar
20 • written 5.5 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
1.2k
views
How to label Phage, resistance and virulence genes name in BRIG blast ring ?
genome
next-gen
sequencing
sequence
gene
5.5 years ago by
k.kathirvel93
▴ 310
0
votes
0
replies
1.1k
views
Comment:
C: convert entrez ID to miRNA
5.5 years ago by
k.kathirvel93
▴ 310
0
votes
0
replies
1.1k
views
Comment:
C: convert entrez ID to miRNA
5.5 years ago by
k.kathirvel93
▴ 310
0
votes
0
replies
758
views
how to find RT- qPCR data for perticular SEQC RNA-seq data set?
RNA-Seq
rna-seq
next-gen
genome
5.7 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
14k
views
Comment:
C: Volcano_plot using R
5.8 years ago by
k.kathirvel93
▴ 310
1
vote
1
reply
14k
views
Answer:
C: Volcano_plot using R
5.8 years ago by
k.kathirvel93
▴ 310
0
votes
0
replies
1.9k
views
Comment:
C: Parsnp Error. Why?
5.8 years ago by
k.kathirvel93
▴ 310
0
votes
0
replies
1.9k
views
Comment:
C: Parsnp Error. Why?
5.8 years ago by
k.kathirvel93
▴ 310
1
vote
3
replies
1.9k
views
Parsnp Error. Why?
SNP
software error
next-gen
snp
genome
5.8 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
3.7k
views
Answer:
A: Can logCPM in edgeR be used to compare expression of genes ?
5.9 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
1.6k
views
Comment:
C: How can I extract SNP from bacterial genome?
5.9 years ago by
k.kathirvel93
▴ 310
0
votes
4
replies
1.6k
views
How can I extract SNP from bacterial genome?
snp
next-gen
sequencing
gene
genome
updated 5.9 years ago by
shubhra.bhattacharya
▴ 140 • written 5.9 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
1.9k
views
Comment:
C: target gene selection for miRNA
5.9 years ago by
k.kathirvel93
▴ 310
0
votes
0
replies
1.2k
views
Comment:
C: sorting columns by same values to do DEG analysis
5.9 years ago by
k.kathirvel93
▴ 310
1
vote
0
replies
1.0k
views
Comment:
C: How to extract information from RNA-seq data?
5.9 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
1.0k
views
Answer:
A: How to extract information from RNA-seq data?
5.9 years ago by
k.kathirvel93
▴ 310
2
votes
5
replies
1.5k
views
Suggestions needed for mIRNA-human target prediction ?
rna-seq
next-gen
gene
updated 5.9 years ago by
zhxq
• 0 • written 5.9 years ago by
k.kathirvel93
▴ 310
1
vote
1
reply
1.5k
views
Comment:
C: Suggestions needed for mIRNA-human target prediction ?
5.9 years ago by
k.kathirvel93
▴ 310
1
vote
2
replies
1.5k
views
Comment:
C: How to remove special characters from text files?
5.9 years ago by
k.kathirvel93
▴ 310
0
votes
0
replies
1.7k
views
Comment:
C: miRNA mRNA interaction studies
5.9 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
1.7k
views
Comment:
C: miRNA mRNA interaction studies
5.9 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
1.7k
views
Comment:
C: miRNA mRNA interaction studies
5.9 years ago by
k.kathirvel93
▴ 310
20
votes
11
replies
2.6k
views
miRNA-seq DE analysis with duplicate replicates. Am i correct?
R
next-gen
updated 5.9 years ago by
GiV17
▴ 50 • written 5.9 years ago by
k.kathirvel93
▴ 310
0
votes
2
replies
2.6k
views
Comment:
A: miRNA-seq DE analysis with duplicate replicates. Am i correct?
5.9 years ago by
k.kathirvel93
▴ 310
0
votes
0
replies
3.3k
views
Comment:
C: Differential expression analysis on miRNA count files
6.0 years ago by
k.kathirvel93
▴ 310
0
votes
2
replies
6.4k
views
Comment:
C: BLAST all against all
6.0 years ago by
k.kathirvel93
▴ 310
0
votes
1
reply
2.5k
views
Comment:
A: Primer design from mapping file ?
6.0 years ago by
k.kathirvel93
▴ 310
1
vote
6
replies
4.9k
views
How to extract unique values between columns in R ?
R
gene
updated 6.0 years ago by
jomo018
▴ 730 • written 6.0 years ago by
k.kathirvel93
▴ 310
0
votes
0
replies
4.9k
views
Comment:
C: How to extract unique values between columns in R ?
6.0 years ago by
k.kathirvel93
▴ 310
0
votes
0
replies
12k
views
Comment:
C: SRA files bulk downloads
6.0 years ago by
k.kathirvel93
▴ 310
167 results • Page
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