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871
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lncRNA prediction using CPAT?
CPAT lncRNA
4.1 years ago by mathavanbioinfo ▴ 90
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0
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1.4k
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Comment: C: CPAT error while analysis
4.1 years ago by mathavanbioinfo ▴ 90
0
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1
reply
797
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DEGs analysis with StringTie results?
StringTie DEGs DESeq2
4.2 years ago by mathavanbioinfo ▴ 90
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0
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2.8k
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Comment: A: construction of draft genome from the contigs
4.3 years ago by mathavanbioinfo ▴ 90
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1
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2.3k
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Comment: C: How to get GTF file for Rousettus_aegyptiacus?
4.3 years ago by mathavanbioinfo ▴ 90
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1
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2.3k
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Comment: A: How to get GTF file for Rousettus_aegyptiacus?
4.3 years ago by mathavanbioinfo ▴ 90
2
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8
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2.3k
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How to get GTF file for Rousettus_aegyptiacus?
StringTie GTF Assembly Rousettus aegyptiacus
4.3 years ago by mathavanbioinfo ▴ 90
0
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1
reply
927
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How to construct draft genome of virus using Trinity de novo assembler?
RNA virus amplicons trintiy
4.3 years ago by mathavanbioinfo ▴ 90
0
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1
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2.3k
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Comment: C: How to get GTF file for Rousettus_aegyptiacus?
4.3 years ago by mathavanbioinfo ▴ 90
0
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4
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2.0k
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How to extract 3', 5' UTR sequences from genbank records using python, PERL and R code?
UTR
updated 4.3 years ago by ▴ 120 • written 4.3 years ago by ▴ 90
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0
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743
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Comment: C: Is virus specific UTR prediction tool available?
4.4 years ago by mathavanbioinfo ▴ 90
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2
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743
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Is virus specific UTR prediction tool available?
UTR
4.4 years ago by mathavanbioinfo ▴ 90
0
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0
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529
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Best assembler for WGS for RNA viruses?
WGS
4.4 years ago by mathavanbioinfo ▴ 90
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0
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1.3k
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Comment: C: Downloading RNA-Seq Dataset
4.5 years ago by mathavanbioinfo ▴ 90
1
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1
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3.0k
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Answer: C: Question on performing RMA normalization
4.5 years ago by mathavanbioinfo ▴ 90
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0
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1.7k
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Comment: C: STRING does not support networks larger than 2000 nodes.
4.5 years ago by mathavanbioinfo ▴ 90
2
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1
reply
802
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How to create matrix for larger data set?
matrix RNA-Seq
updated 4.6 years ago by 82k • written 4.6 years ago by ▴ 90
0
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0
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945
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What is the differences in index building by hisat with or without exon, splicing variant files?
lncRNA RNA-Seq hisat2
4.6 years ago by mathavanbioinfo ▴ 90
0
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0
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1.5k
views
How to convert agilent probe id into gene symbol in gene expression matrix?
agilent probe conversion
4.6 years ago by mathavanbioinfo ▴ 90
0
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1
reply
3.8k
views
Comment: Comment: Normalization agilent microarray data?
updated 3.0 years ago by 43k • written 4.6 years ago by ▴ 90
0
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0
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807
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Novel lncRNA identification and quantification RNA seq?
RNA-Seq sequencing assembly hisat2 lncRNA
4.6 years ago by mathavanbioinfo ▴ 90
1
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1
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3.8k
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Comment: C: Normalization agilent microarray data?
4.6 years ago by mathavanbioinfo ▴ 90
0
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1
reply
3.8k
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Comment: C: Normalization agilent microarray data?
4.6 years ago by mathavanbioinfo ▴ 90
0
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1
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3.8k
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Comment: C: Normalization agilent microarray data?
4.6 years ago by mathavanbioinfo ▴ 90
0
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1
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3.8k
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Comment: C: Normalization agilent microarray data?
4.6 years ago by mathavanbioinfo ▴ 90
3
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21
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3.8k
views
Normalization agilent microarray data?
Microarray Normalization
updated 3.0 years ago by 43k • written 4.6 years ago by ▴ 90
1
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4
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1.5k
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How to extract lncRNA from CPC2 output?
RNA-Seq Assembly next-gen
updated 4.6 years ago by ▴ 160 • written 4.6 years ago by ▴ 90
0
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1
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616
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Comment: C: Is there any range for significant count of DEGs?
4.6 years ago by mathavanbioinfo ▴ 90
0
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4
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616
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Is there any range for significant count of DEGs?
RNA-Seq rna-seq gene
4.6 years ago by mathavanbioinfo ▴ 90
0
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0
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1.5k
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Comment: C: How to extract lncRNA from CPC2 output?
4.6 years ago by mathavanbioinfo ▴ 90
0
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0
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1.5k
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Comment: C: How to extract lncRNA from CPC2 output?
4.6 years ago by mathavanbioinfo ▴ 90
0
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2
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551
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Where I can download index files for Rousettus aegyptiacus?
genome rna-seq assembly
updated 4.7 years ago by ★ 3.6k • written 4.7 years ago by ▴ 90
0
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2
replies
769
views
How Interpret the hisat2 output?
ngs
updated 4.8 years ago by 3.2k • written 4.8 years ago by ▴ 90
0
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1
reply
823
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What is acceptable optimal overall percentage of Hisat2?
rna-seq
4.9 years ago by mathavanbioinfo ▴ 90
0
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0
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1.3k
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How to compare time series data of gene expression studies?
sequencing
6.3 years ago by mathavanbioinfo ▴ 90
0
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1
reply
1.4k
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microarray data analysis GEO2R results?
gene
6.5 years ago by mathavanbioinfo ▴ 90
0
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0
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3.0k
views
Comment: C: single probe represent multiple genes?
7.2 years ago by mathavanbioinfo ▴ 90
2
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4
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3.0k
views
single probe represent multiple genes?
R
updated 7.2 years ago by ★ 2.0k • written 7.2 years ago by ▴ 90
0
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1
reply
1.4k
views
What are all the different methods available for identifying the DEG?
Microarray Limma
7.3 years ago by mathavanbioinfo ▴ 90
0
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1
reply
1.8k
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Pathway analysis of miRNA?
next-gen
updated 8.0 years ago by 20 • written 8.1 years ago by ▴ 90
1
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3
replies
4.3k
views
Microarray adata Normalization using GEO2R?
gene
updated 8.0 years ago by ▴ 20 • written 8.1 years ago by ▴ 90
0
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2
replies
2.6k
views
Comment: C: Up and Down regulated genes
8.1 years ago by mathavanbioinfo ▴ 90
2
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7
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2.6k
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Up and Down regulated genes
next-gen
8.1 years ago by mathavanbioinfo ▴ 90
4
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2
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2.2k
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Differential gene expression
next-gen
updated 8.1 years ago by ▴ 220 • written 8.1 years ago by ▴ 90
0
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2
replies
1.8k
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Meta analysis of microarray data merits and demerits
gene
updated 8.1 years ago by 20 • written 8.1 years ago by ▴ 90
0
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2
replies
1.8k
views
MIcroarray data analysis?
next-gen
updated 8.1 years ago by 8.2k • written 8.1 years ago by ▴ 90
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