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4
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1.5k
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Bioinformatics in Graviton2 AWS
genome assembly aws graviton2
written 2.9 years ago by ▴ 30
0
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0
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399
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Understanding Kfamscan
K0 kfamscan kegg protein
2.3 years ago by vm.higareda ▴ 30
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0
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2.5k
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Comment: Comment: N50 for de novo assembly result is too short
3.0 years ago by vm.higareda ▴ 30
3
votes
1
reply
836
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How to download specific genomes
comparative ncbi genomes genomics assembly
updated 3.6 years ago by 147k • written 3.6 years ago by ▴ 30
1
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1
reply
1.2k
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taxonomic classification with rna-seq data
taxonomy rnaseq Kraken kaiju IMSA+A
4.9 years ago by vm.higareda ▴ 30
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1
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4.0k
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Comment: C: Problem to run checkm.
5.0 years ago by vm.higareda ▴ 30
0
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0
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1.5k
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Comment: C: what is Kmer coverage
5.2 years ago by vm.higareda ▴ 30
0
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2
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1.5k
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what is Kmer coverage
sequence genome metagenome Assembly SPAdes
updated 5.2 years ago by ★ 2.4k • written 5.2 years ago by ▴ 30
2
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1
reply
2.3k
views
kallisto with reference genome
RNA-Seq kallisto
5.9 years ago by vm.higareda ▴ 30
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2
replies
1.7k
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HTseq-counts not counting correctly?
RNA-Seq htseq Drosophila
6.1 years ago by vm.higareda ▴ 30
0
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1
reply
2.7k
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Comment: C: counts in rna-seq cpm
6.7 years ago by vm.higareda ▴ 30
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5
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2.7k
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counts in rna-seq cpm
RNA-Seq edgeR cpm transcriptomics data
updated 6.7 years ago by 35k • written 6.7 years ago by ▴ 30
0
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1
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2.7k
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Comment: C: counts in ran-seq cpm
6.7 years ago by vm.higareda ▴ 30
1
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0
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3.4k
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Comment: C: EdgeR (TMM): Samples with outlier but still show extremely low p-value and FDR
6.7 years ago by vm.higareda ▴ 30
0
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0
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3.4k
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Comment: A: EdgeR (TMM): Samples with outlier but still show extremely low p-value and FDR
6.7 years ago by vm.higareda ▴ 30
0
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1
reply
1.7k
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detecting antisense transcripts
RNA-Seq strand rna illumina antisense
6.8 years ago by vm.higareda ▴ 30
0
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0
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3.8k
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Comment: C: edgeR understanding statistics
7.1 years ago by vm.higareda ▴ 30
0
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1
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3.8k
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Comment: C: edgeR understanding statistics
7.1 years ago by vm.higareda ▴ 30
3
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6
replies
3.8k
views
edgeR understanding statistics
RNA-Seq edgeR statistics transcriptomics
updated 7.1 years ago by 88k • written 7.1 years ago by ▴ 30
0
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0
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28k
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Comment: C: TMM normalization factors in RNA-seq analysis
7.1 years ago by vm.higareda ▴ 30
1
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2
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1.5k
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enrichment analysis tools
RNA-Seq DE expression enrichment gene
updated 7.2 years ago by 7.6k • written 7.2 years ago by ▴ 30
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0
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5.0k
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Comment: C: Strand-option in hisat2
7.4 years ago by vm.higareda ▴ 30
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1
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5.0k
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Comment: C: Strand-option in hisat2
7.4 years ago by vm.higareda ▴ 30
0
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1
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5.0k
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Comment: C: Strand-option in hisat2
7.4 years ago by vm.higareda ▴ 30
0
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0
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5.0k
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Comment: A: Strand-option in hisat2
7.4 years ago by vm.higareda ▴ 30
1
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11
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5.0k
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Strand-option in hisat2
RNA-Seq hisat2 strand
7.4 years ago by vm.higareda ▴ 30
0
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2
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5.0k
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Comment: A: Strand-option in hisat2
7.4 years ago by vm.higareda ▴ 30
0
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0
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1.2k
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basic question cuffdiff
RNA-Seq cuffdiff transcriptomics
7.4 years ago by vm.higareda ▴ 30
0
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1
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1.5k
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Comment: C: Inconsistency Between Cufflinks And Cuffdiff
7.5 years ago by vm.higareda ▴ 30
0
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1
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1.5k
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Comment: C: Inconsistency Between Cufflinks And Cuffdiff
7.5 years ago by vm.higareda ▴ 30
0
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5
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1.5k
views
Inconsistency Between Cufflinks And Cuffdiff
RNA-Seq cufflinks rna cuffdiff
updated 7.5 years ago by 101k • written 7.5 years ago by ▴ 30
0
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1
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5.2k
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Comment: C: Using Hisat2 with strand specific bacteria sequences
8.1 years ago by vm.higareda ▴ 30
3
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2
replies
2.4k
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Doubts about RNA-seq Cufflinks
RNA-Seq
updated 8.1 years ago by 104k • written 8.1 years ago by ▴ 30
0
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1
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1.5k
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Comment: C: Drosophila differential expression.
8.2 years ago by vm.higareda ▴ 30
1
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3
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1.5k
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Drosophila differential expression.
RNA-Seq drosophila Hisat2 cufflinks cuffdiff
updated 8.2 years ago by ★ 1.6k • written 8.2 years ago by ▴ 30
0
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0
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2.8k
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Comment: C: Differential expression analysis of transcriptome data
8.2 years ago by vm.higareda ▴ 30
3
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5
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5.2k
views
Using Hisat2 with strand specific bacteria sequences
alignment RNA-Seq
updated 19 months ago by 44k • written 8.3 years ago by ▴ 30
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