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729
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Comment: Comment: Obtaining clinical data from the TCGA data portal
9 months ago by elisheva ▴ 120
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2
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729
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Obtaining clinical data from the TCGA data portal
Cancer hg38 TCGA
9 months ago by elisheva ▴ 120
0
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2
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914
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Obtaining Infinium Methylation450K manifest for hg38
TCGA hg38 methylation Illumina
updated 12 months ago by ★ 1.3k • written 12 months ago by ▴ 120
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0
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312
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Get metadat from the ICGC data portal
hg38 ICGC Cancer
14 months ago by elisheva ▴ 120
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0
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604
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Using DANPOS2 to determine nucleosome positions
MNase-seq DANPOS ENCODE bigwig
2.3 years ago by elisheva ▴ 120
0
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1
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3.4k
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Comment: Comment: star --readFilesIn error when using unmapped.out.mate1/2 files
2.6 years ago by elisheva ▴ 120
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0
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1.3k
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Comment: Comment: Bedmethyl
3.0 years ago by elisheva ▴ 120
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1
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882
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Answer: Answer: how to handle duplicate reads in unpaired Whole Exome Sequence
3.1 years ago by elisheva ▴ 120
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0
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4.7k
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Answer: Answer: make a BED file with exons only
3.1 years ago by elisheva ▴ 120
0
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2
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795
views
Covid variant sequences
FASTA VCF variants Covid
updated 3.2 years ago by 151k • written 3.2 years ago by ▴ 120
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0
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6.2k
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Comment: Comment: Identifying mutations in an aligment
3.4 years ago by elisheva ▴ 120
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1
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1.6k
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Comment: Comment: ENCODE: Why are there more than one bed narrowPeak file for each DNase-seq exper
4.0 years ago by elisheva ▴ 120
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1
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1.6k
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Comment: Comment: ENCODE: Why are there more than one bed narrowPeak file for each DNase-seq exper
4.0 years ago by elisheva ▴ 120
2
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1
reply
1.4k
views
Error with SRA Toolkit prefetch command
timeout sra ncbi https
updated 4.0 years ago by 88k • written 4.0 years ago by ▴ 120
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1
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1.4k
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Comment: C: Comparison of allele frequencies between population
4.4 years ago by elisheva ▴ 120
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1
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1.4k
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Comment: C: Comparison of allele frequencies between population
4.4 years ago by elisheva ▴ 120
4
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5
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1.4k
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Comparison of allele frequencies between population
SNP vcf 1000 genome project population
updated 4.4 years ago by 11k • written 4.4 years ago by ▴ 120
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0
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14k
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Comment: C: How to download VCF of 1000 genome project with population frequencies?
4.4 years ago by elisheva ▴ 120
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0
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1.7k
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Comment: C: Confusion regarding 7th and 8th column of FANTOM5 Enhancer Coordinates BED File
4.9 years ago by elisheva ▴ 120
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1
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1.7k
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Comment: C: Confusion regarding 7th and 8th column of FANTOM5 Enhancer Coordinates BED File
4.9 years ago by elisheva ▴ 120
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2
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959
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Finding enhancers of the whole human body
enhancers fantom5 CAGE-seq
5.0 years ago by elisheva ▴ 120
2
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6
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2.2k
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Retrive genomic sequences of genes of all ensembl organsims
sequence sequencing ensembl ftp gene
5.2 years ago by elisheva ▴ 120
0
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1
reply
2.2k
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Comment: C: Retrive gene sequences of all ensembl organsims
5.2 years ago by elisheva ▴ 120
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1
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2.2k
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Comment: C: Retrive gene sequences of all ensembl organsims
5.2 years ago by elisheva ▴ 120
2
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0
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685
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Extract the sequence of retrotransposons sites
genome retrotransposons ucsc
5.2 years ago by elisheva ▴ 120
0
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0
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41k
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Comment: C: What is P value and Padj value in DEGs ?
5.4 years ago by elisheva ▴ 120
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0
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1.2k
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Comment: C: HTSeq-count: gene models/transcripts are in FASTA format not gtf/gff
5.4 years ago by elisheva ▴ 120
0
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1
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1.4k
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Comment: C: Convert regex into DNAString object
5.8 years ago by elisheva ▴ 120
2
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3
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1.4k
views
Convert regex into DNAString object
R bioconductor Biostrings
5.8 years ago by elisheva ▴ 120
2
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18
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3.7k
views
Help with finding introns
cDNA genome introns
updated 6.0 years ago by 20 • written 7.9 years ago by ▴ 120
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0
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2.4k
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Comment: C: Customising bedtools shuffle command
6.3 years ago by elisheva ▴ 120
5
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10
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4.9k
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Finding exons and introns sequences
genome sequence exon intron ensembl
updated 6.6 years ago by ★ 3.8k • written 6.6 years ago by ▴ 120
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0
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4.9k
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Comment: C: Finding exons and introns sequences
6.6 years ago by elisheva ▴ 120
0
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1
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4.9k
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Comment: C: Finding exons and introns sequences
6.6 years ago by elisheva ▴ 120
0
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1
reply
4.9k
views
Comment: C: finding exons and introns sequences
6.6 years ago by elisheva ▴ 120
0
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1
reply
4.9k
views
Comment: C: finding exons and introns sequences
6.6 years ago by elisheva ▴ 120
0
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12
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2.7k
views
bedtools intersect issue
bed bedtools
updated 2.2 years ago by 45k • written 6.7 years ago by ▴ 120
0
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1
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2.7k
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Comment: C: bedtools intersect issue
6.7 years ago by elisheva ▴ 120
0
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1
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2.7k
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Comment: C: bedtools intersect issue
6.7 years ago by elisheva ▴ 120
0
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1
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2.7k
views
Comment: C: bedtools intersect issue
6.7 years ago by elisheva ▴ 120
0
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1
reply
2.7k
views
Comment: C: bedtools intersect issue
6.7 years ago by elisheva ▴ 120
0
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1
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3.9k
views
Comment: C: deepTools plot profile problem
6.9 years ago by elisheva ▴ 120
6
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4
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3.9k
views
deepTools plot profile problem
deepTools
updated 2.2 years ago by 45k • written 6.9 years ago by ▴ 120
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1
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2.1k
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Comment: C: Plotting average profiles
7.0 years ago by elisheva ▴ 120
4
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3
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2.1k
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Plotting average profiles
R Bioconductor
7.0 years ago by elisheva ▴ 120
4
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9
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2.9k
views
The efficient way to generate fasta and bed files
python fasta bed
7.1 years ago by elisheva ▴ 120
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2
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2.9k
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Comment: C: The efficient way to generate fasta and bed files
7.1 years ago by elisheva ▴ 120
2
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2
replies
4.6k
views
Scatterplot with hexbin
R Plot hexbin
updated 7.4 years ago by 11k • written 7.4 years ago by ▴ 120
1
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2
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1.7k
views
Problem with loacting gtf file
gtf ucsc gene
updated 7.5 years ago by 151k • written 7.5 years ago by ▴ 120
0
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1
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2.7k
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Comment: C: Getting 3D model
7.5 years ago by elisheva ▴ 120
127 results • Page 1 of 3
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