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how to run limma for large datasets
R HPC biostatistics statistics
updated 7 weeks ago by 43k • written 7 weeks ago by ▴ 460
1
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1
reply
307
views
robust linear regression with interaction term
R epigenetic biostatistics statistics
updated 10 weeks ago by ▴ 910 • written 10 weeks ago by ▴ 460
1
vote
2
replies
356
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how to do Manhatton plot for significant DNA methylation sites associations
R array EPIC statistics Epigenetics
3 months ago by Bioinfonext ▴ 460
1
vote
3
replies
1.7k
views
GOSeq gene ontology enrichment analysis in rice
goseq R
updated 3 months ago by 19k • written 4.0 years ago by ▴ 460
1
vote
1
reply
260
views
how arrange samples columns according to row names from another file in R
statistics r biostatistics
updated 4 months ago by 13k • written 4 months ago by ▴ 460
3
votes
2
replies
375
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how to merge two files without duplicating same column
R statistics biostatistics
updated 4 months ago by ▴ 300 • written 4 months ago by ▴ 460
3
votes
4
replies
531
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how to remove multiple columns from a file in R
r
5 months ago by Bioinfonext ▴ 460
1
vote
4
replies
418
views
select unique samples in R
statistics r biostatistics
5 months ago by Bioinfonext ▴ 460
0
votes
2
replies
378
views
filtering samples
R statistics
updated 6 months ago by 142k • written 6 months ago by ▴ 460
2
votes
6
replies
601
views
how to merge multiple files based on column header
R statistics biostatistics
updated 6 months ago by 6.2k • written 6 months ago by ▴ 460
0
votes
2
replies
492
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R packages for DNA methylation as mediator analysis
statistics R EPIgenetics array EPIC
6 months ago by Bioinfonext ▴ 460
0
votes
0
replies
257
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DMRcate design
R Epigenetics EPIC DMRcate
updated 7 months ago by 43k • written 7 months ago by ▴ 460
0
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7
replies
5.3k
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Error: protect(): protection stack overflow
R random-forest
updated 9 months ago by 43k • written 3.6 years ago by ▴ 460
1
vote
1
reply
398
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linking methylation/SNPs to gene expression
statistics GWAS R epigenetics
updated 15 months ago by ★ 2.9k • written 15 months ago by ▴ 460
2
votes
2
replies
7.1k
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How to understand Hisat2 aligment result
RNA-Seq
updated 19 months ago by ▴ 40 • written 7.3 years ago by ▴ 460
0
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0
replies
307
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Imputation during SNPs calling
Genomics statistics Bioconducter
24 months ago by Bioinfonext ▴ 460
4
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14
replies
1.7k
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arrange samples in same order in rows and column in R
R statistics
23 months ago by Bioinfonext ▴ 460
0
votes
0
replies
321
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filtering.context.removal in RnBeads
RnBeads Epigenetics R
2.1 years ago by Bioinfonext ▴ 460
3
votes
8
replies
6.7k
views
how to run Jupyter script on Slurm HPC
HPC jupyter
updated 2.2 years ago by ▴ 10 • written 3.8 years ago by ▴ 460
0
votes
1
reply
750
views
how to plot correlation data in R
Network cytoscape R
updated 2.6 years ago by 88k • written 2.6 years ago by ▴ 460
4
votes
1
reply
3.1k
views
how to pheatmap color bar based on column category
Bioconducter R pheatmap
2.6 years ago by Bioinfonext ▴ 460
0
votes
1
reply
1.3k
views
Network plot using NetCoMi and igraph
igraph R plot Network amplicon
updated 2.7 years ago by 3.6k • written 2.7 years ago by ▴ 460
2
votes
2
replies
951
views
network analysis for microbial amplicon sequencing data
plot Network igraph R
2.7 years ago by Bioinfonext ▴ 460
3
votes
5
replies
3.1k
views
BUSCO installation and run
RNAseq
updated 2.8 years ago by 8.5k • written 2.8 years ago by ▴ 460
6
votes
18
replies
5.3k
views
6 follow
How to generate a combined read count txt file with header as file name
bash linux awk R
updated 2.7 years ago by ▴ 10 • written 4.7 years ago by ▴ 460
0
votes
1
reply
2.6k
views
how to color positive and negative correlation in Cytoscape
Cytoscape
updated 2.9 years ago by • 0 • written 2.9 years ago by ▴ 460
1
vote
2
replies
959
views
Cytoscape for co-occurence network analysis
Microbiome 16S analysis Cytoscape Network
2.9 years ago by Bioinfonext ▴ 460
1
vote
6
replies
1.8k
views
pheatmap input file
r Qiime2 pheatmap
3.0 years ago by Bioinfonext ▴ 460
0
votes
6
replies
1.6k
views
space converted into dots in header name
R Rstudio microbiome
3.1 years ago by Bioinfonext ▴ 460
5
votes
6
replies
1.0k
views
Get all rows matching to list
R Bioconducter
updated 3.3 years ago by 20 • written 3.5 years ago by ▴ 460
3
votes
1
reply
952
views
DEseq2 result file figure between Genus and log2fold change
R Bioconducter
updated 3.5 years ago by 13k • written 3.5 years ago by ▴ 460
3
votes
6
replies
1.2k
views
filtering column based on column header from a file
bash linux R
updated 3.5 years ago by ★ 4.7k • written 3.5 years ago by ▴ 460
0
votes
2
replies
1.3k
views
volcano plot not showing genera name clearly
R visulization RNAseq
updated 3.6 years ago by 82k • written 3.6 years ago by ▴ 460
6
votes
10
replies
3.3k
views
Trimmomatic: LEADING and TRAILING
next-gen
updated 3.6 years ago by 20 • written 5.3 years ago by ▴ 460
3
votes
5
replies
2.1k
views
how to speed up blastx run on slurm HPC
BASH UNIX HPC
updated 3.7 years ago by ★ 27k • written 3.7 years ago by ▴ 460
0
votes
2
replies
1.2k
views
Error while running Jupyter script on HPC
Biopython Jupyter qiime2
3.7 years ago by Bioinfonext ▴ 460
1
vote
5
replies
5.0k
views
DESeq2 cannot compute log geometric means
DESeq2 RNA-Seq R
updated 3.7 years ago by 3.6k • written 3.7 years ago by ▴ 460
11
votes
19
replies
25k
views
7 follow
Find number of rows contain zero raw count across all sample (column) using R
R
updated 17 months ago by 43k • written 7.0 years ago by ▴ 460
3
votes
6
replies
1.3k
views
how to get total read count, mapped read count and unmapped read count from multiple sam or bam files
RNAseq PYTHON R bash
updated 12 months ago by 43k • written 3.7 years ago by ▴ 460
3
votes
5
replies
852
views
how to change column header based on the second file column
R BASH LINUX UNIX
updated 3.7 years ago by 161k • written 3.7 years ago by ▴ 460
4
votes
4
replies
856
views
Downloading gene sequences for a list of genes using E-utilities
RNA-Seq linux ncbi bash genome
3.7 years ago by Bioinfonext ▴ 460
1
vote
7
replies
1.3k
views
Error in GOseq analysis
RNA-Seq GOseq R
3.8 years ago by Bioinfonext ▴ 460
6
votes
11
replies
1.9k
views
How to extract genome files based on genome ID
linux R BASH
updated 3.8 years ago by ▴ 60 • written 3.8 years ago by ▴ 460
0
votes
0
replies
530
views
How to filter microbial genome based on genome ID
bash linux microbial genome
3.8 years ago by Bioinfonext ▴ 460
0
votes
0
replies
2.0k
views
Genome guided assembly using cufflinks
Assembly
updated 3.9 years ago by 20 • written 7.3 years ago by ▴ 460
1
vote
6
replies
1.1k
views
how to filter microbial genome based on quality score
metagenomics repophlan
3.9 years ago by Bioinfonext ▴ 460
2
votes
3
replies
659
views
how to write all pair end file name in a tab delimited format
linux unix bash
updated 4.1 years ago by 82k • written 4.1 years ago by ▴ 460
0
votes
0
replies
2.4k
views
Relative abundance in phyloseq and biplot
vegan phyloseq R bioconducter
4.1 years ago by Bioinfonext ▴ 460
2
votes
6
replies
1.4k
views
extract count data for a gene ID list in R
R
4.1 years ago by Bioinfonext ▴ 460
1
vote
7
replies
3.6k
views
PCoA plot with phyla abundance
R vegan phyloseq
4.2 years ago by Bioinfonext ▴ 460
158 results • Page 1 of 4
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