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questions
0
votes
10
replies
4.0k
views
6 follow
Error message running GeMoMa
gene
updated 20 months ago by
GenoMax
141k • written 4.8 years ago by
valopes
▴ 30
0
votes
4
replies
860
views
Package lncDIFF input files format
RNA-Seq
updated 10 months ago by
Ram
43k • written 3.1 years ago by
valopes
▴ 30
4
votes
7
replies
5.3k
views
Beagle imputation - duplication position error
SNP
updated 3.2 years ago by
marinamartinezalvaro
• 0 • written 6.0 years ago by
valopes
▴ 30
0
votes
0
replies
460
views
rMATS reading only part of gtf issue
rna-seq
3.2 years ago by
valopes
▴ 30
0
votes
4
replies
1.3k
views
How extract read ID from a bam file per mapped feature (gene)
alignment
3.6 years ago by
valopes
▴ 30
0
votes
4
replies
748
views
de novo transcriptome
assembly
rna-seq
updated 4.0 years ago by
colindaven
6.4k • written 4.0 years ago by
valopes
▴ 30
0
votes
6
replies
3.5k
views
Exception in thread "main" java.lang.IllegalArgumentException: Overlap between reference and non-reference samples
SNP
5.8 years ago by
valopes
▴ 30
0
votes
10
replies
3.3k
views
Getting a .vcf file from a Illumina SNPChip results (.bsc file)
SNP
updated 6.0 years ago by
Kevin Blighe
87k • written 6.0 years ago by
valopes
▴ 30
0
votes
0
replies
1.0k
views
I have GBS, resequencing, and ChiSep data, is it possible/right to combine it to performe a GWA?
snp
6.2 years ago by
valopes
▴ 30
4
votes
6
replies
3.9k
views
How can I generate a .vcf faster with GATK - HaplotypleCaller?
snp
updated 6.3 years ago by
Ram
43k • written 6.3 years ago by
valopes
▴ 30
4
votes
5
replies
5.5k
views
Does STAR give the reads that were mapped at intergenic regions? How can I get the regions and count reads?
RNA-Seq
updated 6.3 years ago by
Antonio R. Franco
★ 5.1k • written 6.3 years ago by
valopes
▴ 30
0
votes
6
replies
1.5k
views
Trimmomatic non-conventional adaptors and error
next-gen
updated 6.4 years ago by
Devon Ryan
104k • written 6.4 years ago by
valopes
▴ 30
1
vote
7
replies
6.4k
views
Exception in thread "main" htsjdk.samtools.SAMFormatException: Error parsing SAM header. @RG line missing SM tag. Line: @RG ID:Sample1; File /pat…
Assembly
SNP
updated 6.6 years ago by
Pierre Lindenbaum
161k • written 6.6 years ago by
valopes
▴ 30
1
vote
6
replies
4.2k
views
Counting and extracting in a new file the unique mapped reads from BWA 0.7.15-r1140 mapping
Assembly
updated 6.6 years ago by
Kevin Blighe
87k • written 6.6 years ago by
valopes
▴ 30
4
votes
17
replies
3.1k
views
Error converting sam to bam
genome
updated 6.6 years ago by
Pierre Lindenbaum
161k • written 6.6 years ago by
valopes
▴ 30
2
votes
3
replies
1.4k
views
Counting single end reads
RNA-Seq
updated 6.9 years ago by
Biostar
20 • written 6.9 years ago by
valopes
▴ 30
0
votes
3
replies
1.8k
views
Star for Soybean RNA-seq aligment
RNA-Seq
updated 6.9 years ago by
Michael
54k • written 6.9 years ago by
valopes
▴ 30
1
vote
3
replies
2.3k
views
RNA-seq Hiseq 2000 Trimming
RNA-Seq
updated 6.9 years ago by
GenoMax
141k • written 6.9 years ago by
valopes
▴ 30
0
votes
4
replies
1.2k
views
Best splicing variant
rna-seq
updated 7.0 years ago by
jnoble333
▴ 20 • written 7.0 years ago by
valopes
▴ 30
2
votes
5
replies
2.8k
views
Get part of a sequence from a .bam file, considering the reference genome position.
Assembly
updated 7.2 years ago by
Petr Ponomarenko
★ 2.8k • written 7.2 years ago by
valopes
▴ 30
0
votes
1
reply
2.1k
views
sorted .bam files
sequence
7.2 years ago by
valopes
▴ 30
0
votes
3
replies
3.0k
views
How to get the consensus sequence region from a BAM alignment, with ref genome coordinates
sequence
7.2 years ago by
valopes
▴ 30
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