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Comment: Comment: Umi dedup with fastp
2.3 years ago by samuel ▴ 260
0
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0
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3.7k
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Comment: Comment: fastp 0.22 released, with new FASTQ deduplication feature.
2.3 years ago by samuel ▴ 260
0
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1
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3.0k
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Comment: Comment: Umi dedup with fastp
2.3 years ago by samuel ▴ 260
0
votes
6
replies
3.0k
views
Umi dedup with fastp
fastp
updated 2.3 years ago by 22k • written 2.3 years ago by ▴ 260
7
votes
4
replies
2.4k
views
multiprocessing versus multithreading
parallel processing multithreading
updated 2.5 years ago by 5.1k • written 2.6 years ago by ▴ 260
0
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0
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2.4k
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Comment: Comment: multiprocessing versus multithreading
2.6 years ago by samuel ▴ 260
4
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3
replies
1.3k
views
Fastqs different lanes
fastq
updated 2.6 years ago by 4.2k • written 2.6 years ago by ▴ 260
0
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0
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1.3k
views
Comment: Comment: Fastqs different lanes
2.6 years ago by samuel ▴ 260
9
votes
2
replies
1.8k
views
Somatic truth set
benchmarking Somatic
updated 2.6 years ago by ▴ 160 • written 2.6 years ago by ▴ 260
4
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1
reply
1.8k
views
Answer: Answer: Somatic truth set
2.6 years ago by samuel ▴ 260
0
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1
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1.4k
views
Comment: Comment: Hard clip fastq
2.6 years ago by samuel ▴ 260
4
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4
replies
1.4k
views
Hard clip fastq
fastq
updated 2.6 years ago by 154k • written 2.7 years ago by ▴ 260
0
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0
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2.2k
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Comment: Comment: GIAB Truth Set
2.7 years ago by samuel ▴ 260
0
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2
replies
2.2k
views
GIAB Truth Set
GIAB
2.7 years ago by samuel ▴ 260
1
vote
0
replies
4.3k
views
Comment: Comment: how to get around snakemake with different wildcards input to output rule
2.7 years ago by samuel ▴ 260
6
votes
5
replies
4.3k
views
how to get around snakemake with different wildcards input to output rule
snakemake
2.7 years ago by samuel ▴ 260
1
vote
4
replies
3.1k
views
Merge several input files to single output file snakemake
snakemake
updated 2.7 years ago by ▴ 540 • written 2.7 years ago by ▴ 260
0
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0
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3.1k
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Comment: Comment: Merge several input files to single output file snakemake
2.7 years ago by samuel ▴ 260
1
vote
1
reply
4.3k
views
Answer: Answer: how to get around snakemake with different wildcards input to output rule
updated 2.7 years ago by 45k • written 2.7 years ago by ▴ 260
1
vote
2
replies
2.1k
views
Comment: Comment: snakemake wildcard in shell
2.7 years ago by samuel ▴ 260
7
votes
4
replies
2.1k
views
snakemake wildcard in shell
snakemake
updated 2.7 years ago by 154k • written 2.7 years ago by ▴ 260
0
votes
0
replies
626
views
Next generation sequencing variant calling pipeline
WGS Targeted WES Sequencing
updated 2.8 years ago by 90k • written 2.8 years ago by ▴ 260
0
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0
replies
3.3k
views
Comment: Comment: GATK 4 and Spark multithreading
3.0 years ago by samuel ▴ 260
0
votes
0
replies
666
views
Tumour only B-allele frequency
Frequency B-allele
3.6 years ago by samuel ▴ 260
0
votes
1
reply
844
views
germline heterozygous SNPs
germline SNPs heterozygous
updated 3.6 years ago by 166k • written 3.6 years ago by ▴ 260
1
vote
1
reply
3.4k
views
Extract list of rsIDs from plink
plink
updated 3.7 years ago by 12k • written 3.7 years ago by ▴ 260
0
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1
reply
1.1k
views
plink vcf
plink
updated 3.8 years ago by 11k • written 3.8 years ago by ▴ 260
0
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1
reply
2.9k
views
Comment: Comment: snakemake to merge bams from multiple samples
4.3 years ago by samuel ▴ 260
7
votes
3
replies
2.9k
views
snakemake to merge bams from multiple samples
snakemake
updated 4.3 years ago by ▴ 580 • written 4.3 years ago by ▴ 260
2
votes
1
reply
1.0k
views
How to show statistical significance of overlap of CTCF binding sites
RNA-Seq genome
4.7 years ago by samuel ▴ 260
0
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0
replies
7.3k
views
Comment: A: Mapping paired end and single end reads together
5.7 years ago by samuel ▴ 260
1
vote
0
replies
36k
views
Comment: C: Guppy basecaller ONT
6.6 years ago by samuel ▴ 260
22
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23
replies
36k
views
8 follow
Guppy basecaller ONT
ONT
6.6 years ago by samuel ▴ 260
0
votes
1
reply
36k
views
Comment: A: Guppy basecaller ONT
6.6 years ago by samuel ▴ 260
1
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0
replies
5.2k
views
Answer: A: pybedtools intersect using additional options
6.9 years ago by samuel ▴ 260
2
votes
2
replies
5.2k
views
pybedtools intersect using additional options
pybedtools
6.9 years ago by samuel ▴ 260
0
votes
1
reply
27k
views
Comment: A: Heatmap.2 R for differentially expressed genes DeSEQ2
updated 7.2 years ago by 45k • written 8.7 years ago by ▴ 260
2
votes
1
reply
3.3k
views
TPM with Ballgown?
RNA-Seq
updated 7.2 years ago by ▴ 10 • written 8.5 years ago by ▴ 260
0
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0
replies
1.5k
views
paired analysis ballgown
RNA-Seq
7.4 years ago by samuel ▴ 260
8
votes
6
replies
4.9k
views
Blast many read sequences
alignment contamination blast reads
updated 7.5 years ago by 5.9k • written 7.5 years ago by ▴ 260
1
vote
2
replies
2.5k
views
Extract random number of transcript and exons from gencode annotation
genome sequencing
updated 7.8 years ago by ★ 4.0k • written 7.8 years ago by ▴ 260
1
vote
0
replies
2.5k
views
Answer: A: Extract random number of transcript and exons from gencode annotation
7.8 years ago by samuel ▴ 260
0
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1
reply
4.3k
views
Answer: A: NA for gff compare class code
7.8 years ago by samuel ▴ 260
1
vote
5
replies
4.3k
views
NA for gff compare class code
RNA-Seq
7.8 years ago by samuel ▴ 260
1
vote
1
reply
4.3k
views
Comment: C: NA for gff compare class code
7.8 years ago by samuel ▴ 260
1
vote
2
replies
2.6k
views
GENCODE v.27 BED 12 file
genome next-gen sequence
updated 7.9 years ago by ★ 4.0k • written 7.9 years ago by ▴ 260
1
vote
2
replies
73k
views
Answer: A: How To Convert Gencode Gtf Into Bed Format ?
7.9 years ago by samuel ▴ 260
0
votes
7
replies
2.3k
views
Extract FASTA if two matches
sequence
updated 8.0 years ago by 21k • written 8.0 years ago by ▴ 260
0
votes
1
reply
2.3k
views
Comment: A: Extract FASTA if two matches
8.0 years ago by samuel ▴ 260
0
votes
1
reply
2.3k
views
Comment: A: Extract FASTA if two matches
8.0 years ago by samuel ▴ 260
57 results • Page 1 of 2
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