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505
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The difference blastn output when using subject and db options
genome blastn mite annotation tracker
updated 15 months ago by 150k • written 15 months ago by ▴ 40
1
vote
2
replies
643
views
extract first and last n bp from fasta file from multiple fasta file in R
comparative-genomics
updated 17 months ago by 45k • written 17 months ago by ▴ 40
3
votes
3
replies
757
views
Covert multiple short sequence into list of IUPAC motif
sequence
updated 21 months ago by 150k • written 21 months ago by ▴ 40
0
votes
0
replies
452
views
comparing the intron/ intron location with the reference transcript in the orthologous transcripts
comparative-genomics transcripts
updated 17 months ago by 45k • written 2.3 years ago by ▴ 40
0
votes
0
replies
481
views
How can I identity Branch point sequence from Intron?
DNA-seq splicing RNA-seq
updated 17 months ago by 45k • written 3.1 years ago by ▴ 40
1
vote
1
reply
688
views
Validating splice site using protein sequence
RNA-seq transcript assembly DNA-seq annotation
updated 3.2 years ago by 4.1k • written 3.2 years ago by ▴ 40
0
votes
0
replies
476
views
Where I can find splice-leader (SL) sequence set ?
SL-leader trans-splicing
3.6 years ago by praasu ▴ 40
0
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1
reply
1.3k
views
Comment: Comment: How to extract the first and last 2 nt from multiple sequences in a FASTA file?
3.6 years ago by praasu ▴ 40
3
votes
3
replies
1.3k
views
How to extract the first and last 2 nt from multiple sequences in a FASTA file?
perl awk fasta genome sequence
updated 17 months ago by 45k • written 3.6 years ago by ▴ 40
1
vote
0
replies
926
views
braker2 output: gff file is missing and species folder is empty
prothint braker2 genome braker annotation
updated 3.9 years ago by 12k • written 3.9 years ago by ▴ 40
0
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1
reply
2.2k
views
Comment: C: how to extract intron coordinates (in bed) from bam
4.7 years ago by praasu ▴ 40
0
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1
reply
2.2k
views
Comment: C: how to extract intron coordinates (in bed) from bam
4.7 years ago by praasu ▴ 40
0
votes
1
reply
2.2k
views
Comment: C: how to extract intron coordinates (in bed) from bam
4.7 years ago by praasu ▴ 40
0
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0
replies
9.1k
views
Comment: C: ChIP-Seq TSS Line Plot
4.8 years ago by praasu ▴ 40
0
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0
replies
3.1k
views
Comment: C: convert bedgraph to bed
5.0 years ago by praasu ▴ 40
0
votes
1
reply
3.1k
views
Comment: C: convert bedgraph to bed
5.0 years ago by praasu ▴ 40
0
votes
4
replies
3.1k
views
convert bedgraph to bed
RNA-Seq ChIP-Seq R
5.0 years ago by praasu ▴ 40
4
votes
7
replies
2.2k
views
how to extract intron coordinates (in bed) from bam
RNA-Seq
updated 5.1 years ago by 105k • written 5.1 years ago by ▴ 40
0
votes
0
replies
2.0k
views
Comment: C: Should I merge the Paired-end RNA-seq reads for BLAT for intron identification
5.2 years ago by praasu ▴ 40
0
votes
2
replies
2.0k
views
Comment: C: Should I merge the Paired-end RNA-seq reads for BLAT for intron identification
5.2 years ago by praasu ▴ 40
2
votes
5
replies
2.0k
views
Should I merge the Paired-end RNA-seq reads for BLAT for intron identification
RNA-Seq BLAT alignment
5.2 years ago by praasu ▴ 40
0
votes
0
replies
1.8k
views
Comment: C: Converting gff hints to genbank format for augustus training
5.2 years ago by praasu ▴ 40
0
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0
replies
1.6k
views
Comment: C: gene prediction without GT-AG splice site bias
5.2 years ago by praasu ▴ 40
0
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1
reply
5.5k
views
Comment: C: Augustus training and artemis
updated 5.2 years ago by 45k • written 5.7 years ago by ▴ 40
0
votes
2
replies
1.8k
views
Converting gff hints to genbank format for augustus training
augustus dna-seq genome annotation
updated 5.2 years ago by ▴ 10 • written 5.7 years ago by ▴ 40
0
votes
0
replies
977
views
Mapsplice Error: convert sam file to junctions failed
mapsplice RNA-Seq alignment bowtie
5.4 years ago by praasu ▴ 40
2
votes
4
replies
948
views
how split multiple fasta file into multiple file
R sequence RNA-Seq Assembly genome
updated 5.4 years ago by 87k • written 5.4 years ago by ▴ 40
2
votes
3
replies
1.6k
views
gene prediction without GT-AG splice site bias
Assembly blat genome annotation rna-seq
updated 5.7 years ago by ★ 1.9k • written 5.7 years ago by ▴ 40
2
votes
3
replies
1.2k
views
Mapping Illumina reads against one single gene Vs whole genome
RNA-Seq ChIP-Seq iclip rna-seq
updated 5.8 years ago by 35k • written 5.8 years ago by ▴ 40
0
votes
0
replies
1.2k
views
Comment: C: Mapping Illumina reads against one single gene Vs whole genome
5.8 years ago by praasu ▴ 40
1
vote
0
replies
1.2k
views
Annotation of genome with non-cannonical splice site
RNA-Seq exonerate genome annotation splice site
6.0 years ago by praasu ▴ 40
0
votes
0
replies
2.3k
views
Comment: C: help regarding abyss assembly
6.2 years ago by praasu ▴ 40
0
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1
reply
2.3k
views
Comment: C: help regarding abyss assembly
6.2 years ago by praasu ▴ 40
0
votes
3
replies
2.3k
views
help regarding abyss assembly
next-gen Assembly genome SNP sequencing
6.2 years ago by praasu ▴ 40
1
vote
1
reply
1.6k
views
extracting first exon and corresponding transcript coordinates for human
RNA-Seq R gene genome next-gen
6.5 years ago by praasu ▴ 40
0
votes
1
reply
5.5k
views
Comment: C: Extracting Intron-Exon Reads from bam files
7.2 years ago by praasu ▴ 40
0
votes
1
reply
5.5k
views
Comment: C: Extracting Intron-Exon Reads from bam files
7.2 years ago by praasu ▴ 40
0
votes
1
reply
5.5k
views
Comment: C: Extracting Intron-Exon Reads from bam files
7.2 years ago by praasu ▴ 40
0
votes
1
reply
5.5k
views
Comment: C: Extracting Intron-Exon Reads from bam files
7.2 years ago by praasu ▴ 40
0
votes
1
reply
5.5k
views
Comment: C: Extracting Intron-Exon Reads from bam files
7.2 years ago by praasu ▴ 40
5
votes
11
replies
5.5k
views
Extracting Intron-Exon Reads from bam files
RNA-Seq
updated 7.2 years ago by 165k • written 7.2 years ago by ▴ 40
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