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141
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comparing the intron/ intron location with the reference transcript in the orthologous transcripts
genomics transcripts annotation genome comparative
3 months ago by praasu ▴ 40
0
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0
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184
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How can I identity Branch point sequence from Intron?
RNA-seq transcriptome genome splicing DNA-seq
updated 13 months ago by 70k • written 13 months ago by ▴ 40
1
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1
reply
327
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Validating splice site using protein sequence
RNA-seq transcript assembly DNA-seq annotation
updated 14 months ago by 3.5k • written 14 months ago by ▴ 40
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0
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218
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Where I can find splice-leader (SL) sequence set ?
SL-leader trans-splicing
19 months ago by praasu ▴ 40
0
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0
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573
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Comment: Comment: How to extract the first and last 2 nt from multiple sequences in a FASTA file?
19 months ago by praasu ▴ 40
3
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2
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573
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How to extract the first and last 2 nt from multiple sequences in a FASTA file?
perl awk fasta genome sequence
19 months ago by praasu ▴ 40
1
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0
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575
views
braker2 output: gff file is missing and species folder is empty
prothint braker2 genome braker annotation
updated 23 months ago by 11k • written 23 months ago by ▴ 40
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1
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1.4k
views
Comment: C: how to extract intron coordinates (in bed) from bam
2.7 years ago by praasu ▴ 40
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1
reply
1.4k
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Comment: C: how to extract intron coordinates (in bed) from bam
2.7 years ago by praasu ▴ 40
0
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1
reply
1.4k
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Comment: C: how to extract intron coordinates (in bed) from bam
2.7 years ago by praasu ▴ 40
0
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0
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6.7k
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Comment: C: ChIP-Seq TSS Line Plot
2.8 years ago by praasu ▴ 40
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0
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1.9k
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Comment: C: convert bedgraph to bed
3.0 years ago by praasu ▴ 40
0
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1
reply
1.9k
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Comment: C: convert bedgraph to bed
3.0 years ago by praasu ▴ 40
0
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4
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1.9k
views
convert bedgraph to bed
RNA-Seq ChIP-Seq R
3.0 years ago by praasu ▴ 40
4
votes
7
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1.4k
views
how to extract intron coordinates (in bed) from bam
RNA-Seq
updated 3.1 years ago by 103k • written 3.1 years ago by ▴ 40
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0
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1.2k
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Comment: C: Should I merge the Paired-end RNA-seq reads for BLAT for intron identification
3.2 years ago by praasu ▴ 40
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2
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1.2k
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Comment: C: Should I merge the Paired-end RNA-seq reads for BLAT for intron identification
3.2 years ago by praasu ▴ 40
2
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5
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1.2k
views
Should I merge the Paired-end RNA-seq reads for BLAT for intron identification
RNA-Seq BLAT alignment
3.2 years ago by praasu ▴ 40
0
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0
replies
1.2k
views
Comment: C: Converting gff hints to genbank format for augustus training
3.2 years ago by praasu ▴ 40
0
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0
replies
1.1k
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Comment: C: gene prediction without GT-AG splice site bias
3.2 years ago by praasu ▴ 40
0
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1
reply
4.4k
views
Comment: C: Augustus training and artemis
updated 3.2 years ago by 38k • written 3.7 years ago by ▴ 40
0
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2
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1.2k
views
Converting gff hints to genbank format for augustus training
augustus dna-seq genome annotation
updated 3.2 years ago by ▴ 10 • written 3.7 years ago by ▴ 40
0
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0
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647
views
Mapsplice Error: convert sam file to junctions failed
mapsplice RNA-Seq alignment bowtie
3.4 years ago by praasu ▴ 40
2
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4
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731
views
how split multiple fasta file into multiple file
R sequence RNA-Seq Assembly genome
updated 3.4 years ago by 70k • written 3.4 years ago by ▴ 40
2
votes
3
replies
1.1k
views
gene prediction without GT-AG splice site bias
Assembly blat genome annotation rna-seq
updated 3.7 years ago by ★ 1.6k • written 3.7 years ago by ▴ 40
2
votes
3
replies
783
views
Mapping Illumina reads against one single gene Vs whole genome
RNA-Seq ChIP-Seq iclip rna-seq
updated 3.8 years ago by 34k • written 3.8 years ago by ▴ 40
0
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0
replies
783
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Comment: C: Mapping Illumina reads against one single gene Vs whole genome
3.8 years ago by praasu ▴ 40
1
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0
replies
943
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Annotation of genome with non-cannonical splice site
RNA-Seq exonerate genome annotation splice site
4.0 years ago by praasu ▴ 40
0
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0
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1.7k
views
Comment: C: help regarding abyss assembly
4.3 years ago by praasu ▴ 40
0
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1
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1.7k
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Comment: C: help regarding abyss assembly
4.3 years ago by praasu ▴ 40
0
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3
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1.7k
views
help regarding abyss assembly
next-gen Assembly genome SNP sequencing
4.3 years ago by praasu ▴ 40
1
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1
reply
1.2k
views
extracting first exon and corresponding transcript coordinates for human
RNA-Seq R gene genome next-gen
4.5 years ago by praasu ▴ 40
0
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1
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4.0k
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Comment: C: Extracting Intron-Exon Reads from bam files
5.2 years ago by praasu ▴ 40
0
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1
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4.0k
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Comment: C: Extracting Intron-Exon Reads from bam files
5.2 years ago by praasu ▴ 40
0
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1
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4.0k
views
Comment: C: Extracting Intron-Exon Reads from bam files
5.2 years ago by praasu ▴ 40
0
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1
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4.0k
views
Comment: C: Extracting Intron-Exon Reads from bam files
5.2 years ago by praasu ▴ 40
0
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1
reply
4.0k
views
Comment: C: Extracting Intron-Exon Reads from bam files
5.2 years ago by praasu ▴ 40
2
votes
11
replies
4.0k
views
Extracting Intron-Exon Reads from bam files
RNA-Seq
updated 5.2 years ago by 153k • written 5.2 years ago by ▴ 40
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