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735
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The difference blastn output when using subject and db options
genome blastn mite annotation tracker
updated 23 months ago by 154k • written 23 months ago by ▴ 40
1
vote
2
replies
898
views
extract first and last n bp from fasta file from multiple fasta file in R
comparative-genomics
updated 2.1 years ago by 45k • written 2.1 years ago by ▴ 40
3
votes
3
replies
998
views
Covert multiple short sequence into list of IUPAC motif
sequence
updated 2.4 years ago by 154k • written 2.4 years ago by ▴ 40
0
votes
0
replies
577
views
comparing the intron/ intron location with the reference transcript in the orthologous transcripts
comparative-genomics transcripts
updated 2.1 years ago by 45k • written 2.9 years ago by ▴ 40
0
votes
0
replies
610
views
How can I identity Branch point sequence from Intron?
DNA-seq splicing RNA-seq
updated 2.1 years ago by 45k • written 3.7 years ago by ▴ 40
1
vote
1
reply
862
views
Validating splice site using protein sequence
RNA-seq transcript assembly DNA-seq annotation
updated 3.8 years ago by 4.2k • written 3.8 years ago by ▴ 40
0
votes
0
replies
568
views
Where I can find splice-leader (SL) sequence set ?
SL-leader trans-splicing
4.2 years ago by praasu ▴ 40
0
votes
1
reply
1.7k
views
Comment: Comment: How to extract the first and last 2 nt from multiple sequences in a FASTA file?
4.2 years ago by praasu ▴ 40
3
votes
3
replies
1.7k
views
How to extract the first and last 2 nt from multiple sequences in a FASTA file?
perl awk fasta genome sequence
updated 2.1 years ago by 45k • written 4.2 years ago by ▴ 40
1
vote
0
replies
1.1k
views
braker2 output: gff file is missing and species folder is empty
prothint braker2 genome braker annotation
updated 4.6 years ago by 12k • written 4.6 years ago by ▴ 40
0
votes
1
reply
2.7k
views
Comment: C: how to extract intron coordinates (in bed) from bam
5.3 years ago by praasu ▴ 40
0
votes
1
reply
2.7k
views
Comment: C: how to extract intron coordinates (in bed) from bam
5.3 years ago by praasu ▴ 40
0
votes
1
reply
2.7k
views
Comment: C: how to extract intron coordinates (in bed) from bam
5.3 years ago by praasu ▴ 40
0
votes
0
replies
10k
views
Comment: C: ChIP-Seq TSS Line Plot
5.5 years ago by praasu ▴ 40
0
votes
0
replies
3.7k
views
Comment: C: convert bedgraph to bed
5.7 years ago by praasu ▴ 40
0
votes
1
reply
3.7k
views
Comment: C: convert bedgraph to bed
5.7 years ago by praasu ▴ 40
0
votes
4
replies
3.7k
views
convert bedgraph to bed
RNA-Seq ChIP-Seq R
5.7 years ago by praasu ▴ 40
4
votes
7
replies
2.7k
views
how to extract intron coordinates (in bed) from bam
RNA-Seq
updated 5.8 years ago by 105k • written 5.8 years ago by ▴ 40
0
votes
0
replies
2.5k
views
Comment: C: Should I merge the Paired-end RNA-seq reads for BLAT for intron identification
5.8 years ago by praasu ▴ 40
0
votes
2
replies
2.5k
views
Comment: C: Should I merge the Paired-end RNA-seq reads for BLAT for intron identification
5.8 years ago by praasu ▴ 40
2
votes
5
replies
2.5k
views
Should I merge the Paired-end RNA-seq reads for BLAT for intron identification
RNA-Seq BLAT alignment
5.8 years ago by praasu ▴ 40
0
votes
0
replies
2.1k
views
Comment: C: Converting gff hints to genbank format for augustus training
5.8 years ago by praasu ▴ 40
0
votes
0
replies
1.9k
views
Comment: C: gene prediction without GT-AG splice site bias
5.8 years ago by praasu ▴ 40
0
votes
1
reply
6.1k
views
Comment: C: Augustus training and artemis
updated 5.8 years ago by 45k • written 6.3 years ago by ▴ 40
0
votes
2
replies
2.1k
views
Converting gff hints to genbank format for augustus training
augustus dna-seq genome annotation
updated 5.8 years ago by ▴ 10 • written 6.3 years ago by ▴ 40
0
votes
0
replies
1.1k
views
Mapsplice Error: convert sam file to junctions failed
mapsplice RNA-Seq alignment bowtie
6.1 years ago by praasu ▴ 40
2
votes
4
replies
1.1k
views
how split multiple fasta file into multiple file
R sequence RNA-Seq Assembly genome
updated 6.1 years ago by 90k • written 6.1 years ago by ▴ 40
2
votes
3
replies
1.9k
views
gene prediction without GT-AG splice site bias
Assembly blat genome annotation rna-seq
updated 6.3 years ago by ★ 1.9k • written 6.3 years ago by ▴ 40
2
votes
3
replies
1.5k
views
Mapping Illumina reads against one single gene Vs whole genome
RNA-Seq ChIP-Seq iclip rna-seq
updated 6.4 years ago by 35k • written 6.4 years ago by ▴ 40
0
votes
0
replies
1.5k
views
Comment: C: Mapping Illumina reads against one single gene Vs whole genome
6.4 years ago by praasu ▴ 40
1
vote
0
replies
1.4k
views
Annotation of genome with non-cannonical splice site
RNA-Seq exonerate genome annotation splice site
6.6 years ago by praasu ▴ 40
0
votes
0
replies
2.6k
views
Comment: C: help regarding abyss assembly
6.9 years ago by praasu ▴ 40
0
votes
1
reply
2.6k
views
Comment: C: help regarding abyss assembly
6.9 years ago by praasu ▴ 40
0
votes
3
replies
2.6k
views
help regarding abyss assembly
next-gen Assembly genome SNP sequencing
6.9 years ago by praasu ▴ 40
1
vote
1
reply
1.8k
views
extracting first exon and corresponding transcript coordinates for human
RNA-Seq R gene genome next-gen
7.1 years ago by praasu ▴ 40
0
votes
1
reply
6.2k
views
Comment: C: Extracting Intron-Exon Reads from bam files
7.8 years ago by praasu ▴ 40
0
votes
1
reply
6.2k
views
Comment: C: Extracting Intron-Exon Reads from bam files
7.8 years ago by praasu ▴ 40
0
votes
1
reply
6.2k
views
Comment: C: Extracting Intron-Exon Reads from bam files
7.8 years ago by praasu ▴ 40
0
votes
1
reply
6.2k
views
Comment: C: Extracting Intron-Exon Reads from bam files
7.8 years ago by praasu ▴ 40
0
votes
1
reply
6.2k
views
Comment: C: Extracting Intron-Exon Reads from bam files
7.8 years ago by praasu ▴ 40
5
votes
11
replies
6.2k
views
Extracting Intron-Exon Reads from bam files
RNA-Seq
updated 7.8 years ago by 166k • written 7.8 years ago by ▴ 40
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