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1
vote
3
replies
602
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How to obtain genomic coordinates of novel transcripts?
ensembldb r
updated 23 months ago by 81k • written 23 months ago by ▴ 50
0
votes
0
replies
409
views
How to extract MAF block regions that have full alignment?
species multiple alignment python
2.3 years ago by nattzy94 ▴ 50
0
votes
1
reply
2.5k
views
Comment: Comment: blastp Error: NCBI C++ Exception: ncbi::CObject::ThrowNullPointerException() - A
2.4 years ago by nattzy94 ▴ 50
1
vote
3
replies
2.5k
views
blastp Error: NCBI C++ Exception: ncbi::CObject::ThrowNullPointerException() - Attempt to access NULL pointer
blast
updated 2.4 years ago by 141k • written 2.4 years ago by ▴ 50
0
votes
0
replies
742
views
Error when running Stringtie Merge: Error getting header ID# for gseq 1
assembly stringtie
3.4 years ago by nattzy94 ▴ 50
0
votes
1
reply
660
views
Problem with long EBSeq runtime
RNA-Seq ebseq
3.6 years ago by nattzy94 ▴ 50
0
votes
1
reply
1.2k
views
Error when using snakemake with RSEM
RNA-Seq snakemake
3.6 years ago by nattzy94 ▴ 50
0
votes
0
replies
1.2k
views
Answer: A: Error when using snakemake with RSEM
3.6 years ago by nattzy94 ▴ 50
0
votes
2
replies
892
views
Comment: C: How to do a DGE analysis of a list of 1000 genes of interest?
3.8 years ago by nattzy94 ▴ 50
6
votes
6
replies
892
views
How to do a DGE analysis of a list of 1000 genes of interest?
RNA-Seq R
3.8 years ago by nattzy94 ▴ 50
0
votes
0
replies
1.1k
views
Comment: C: Gffcompare issue: 0 reference transcripts loaded
3.9 years ago by nattzy94 ▴ 50
0
votes
1
reply
1.1k
views
Comment: C: Gffcompare issue: 0 reference transcripts loaded
3.9 years ago by nattzy94 ▴ 50
0
votes
4
replies
1.1k
views
Gffcompare issue: 0 reference transcripts loaded
Assembly
3.9 years ago by nattzy94 ▴ 50
0
votes
0
replies
480
views
Checking workflow for assembly of time series expt using Stringtie-Ballgown
RNA-Seq assembly
3.9 years ago by nattzy94 ▴ 50
0
votes
1
reply
1.6k
views
StringTie merge GTF results in large increase in number of transcripts
RNA-Seq Assembly
updated 3.9 years ago by 87k • written 3.9 years ago by ▴ 50
0
votes
0
replies
668
views
Comment: C: Need help to generate custom MS database using CustomProDB?
4.0 years ago by nattzy94 ▴ 50
0
votes
2
replies
668
views
Need help to generate custom MS database using CustomProDB?
R proteomics
4.0 years ago by nattzy94 ▴ 50
0
votes
1
reply
804
views
Mass Spec: How to get unmatched MS spectra?
proteomics mass spec
4.0 years ago by nattzy94 ▴ 50
0
votes
2
replies
1.2k
views
Annotating an assembled GTF file
RNA-Seq Assembly
updated 4.0 years ago by • 0 • written 4.0 years ago by ▴ 50
3
votes
9
replies
2.0k
views
Problem trying to convert from .gtf to .fasta file
RNA-Seq bash
updated 4.1 years ago by ▴ 10 • written 4.1 years ago by ▴ 50
0
votes
0
replies
1.2k
views
Comment: C: How to input variable into pubmed -esearch function
4.1 years ago by nattzy94 ▴ 50
0
votes
2
replies
1.2k
views
How to input variable into pubmed -esearch function
bash pubmed
4.1 years ago by nattzy94 ▴ 50
1
vote
0
replies
2.0k
views
Comment: C: Problem trying to convert from .gtf to .fasta file
4.1 years ago by nattzy94 ▴ 50
0
votes
1
reply
2.0k
views
Comment: C: Problem trying to convert from .gtf to .fasta file
4.1 years ago by nattzy94 ▴ 50
0
votes
0
replies
2.0k
views
Comment: C: Problem trying to convert from .gtf to .fasta file
4.1 years ago by nattzy94 ▴ 50
0
votes
3
replies
1.1k
views
How to annotate gene list using enrichr?
RNA-Seq gene annotation
updated 4.2 years ago by 87k • written 4.3 years ago by ▴ 50
0
votes
1
reply
2.2k
views
How to solve: fgsea returns empty dataframe
gsea R fgsea
4.3 years ago by nattzy94 ▴ 50
0
votes
0
replies
2.2k
views
Answer: A: How to solve: fgsea returns empty dataframe
4.3 years ago by nattzy94 ▴ 50
2
votes
5
replies
1.6k
views
Help with converting gene symbols to gene IDs
R gsea
updated 4.3 years ago by ★ 1.9k • written 4.3 years ago by ▴ 50
0
votes
1
reply
1.6k
views
Comment: C: Help with converting gene symbols to gene IDs
4.3 years ago by nattzy94 ▴ 50
0
votes
0
replies
1.1k
views
Comment: A: How to annotate gene list using enrichr?
4.3 years ago by nattzy94 ▴ 50
0
votes
0
replies
701
views
Normalizing DNA sequencing reads using DNA spike in [sanity check]
sequencing
4.9 years ago by nattzy94 ▴ 50
0
votes
8
replies
1.7k
views
Having trouble using wildcard
shell loop command line
updated 5.1 years ago by 54k • written 5.1 years ago by ▴ 50
0
votes
1
reply
1.7k
views
Comment: C: Having trouble using wildcard
5.1 years ago by nattzy94 ▴ 50
0
votes
0
replies
1.7k
views
Comment: C: Having trouble using wildcard
5.1 years ago by nattzy94 ▴ 50
0
votes
0
replies
1.7k
views
Comment: C: How to Align to multiple reference genomes -> Discard multiply mapped reads?
5.1 years ago by nattzy94 ▴ 50
0
votes
2
replies
1.7k
views
How to Align to multiple reference genomes -> Discard multiply mapped reads?
bwa cmd alignment
updated 5.1 years ago by 35k • written 5.1 years ago by ▴ 50
9
votes
27
replies
7.5k
views
How do I use Glimmer 3.02?
sequencing
updated 5.2 years ago by • 0 • written 6.1 years ago by ▴ 50
0
votes
1
reply
959
views
How to run Bracken on windows?
sequencing
5.3 years ago by nattzy94 ▴ 50
0
votes
0
replies
7.5k
views
Comment: C: How do I use Glimmer 3.02?
6.1 years ago by nattzy94 ▴ 50
0
votes
1
reply
7.5k
views
Comment: C: How do I use Glimmer 3.02?
6.1 years ago by nattzy94 ▴ 50
0
votes
1
reply
7.5k
views
Comment: C: How do I use Glimmer 3.02?
6.1 years ago by nattzy94 ▴ 50
0
votes
1
reply
7.5k
views
Comment: C: How do I use Glimmer 3.02?
6.1 years ago by nattzy94 ▴ 50
0
votes
1
reply
7.5k
views
Comment: C: How do I use Glimmer 3.02?
6.1 years ago by nattzy94 ▴ 50
0
votes
0
replies
2.7k
views
Comment: C: How to compare the similarity of a dataset against a larger dataset and plot a h
6.6 years ago by nattzy94 ▴ 50
0
votes
1
reply
2.7k
views
Comment: C: How to compare the similarity of a dataset against a larger dataset and plot a h
6.6 years ago by nattzy94 ▴ 50
0
votes
7
replies
2.7k
views
How to compare the similarity of a dataset against a larger dataset and plot a heat map?
heat map R
updated 6.6 years ago by ▴ 360 • written 6.6 years ago by ▴ 50
0
votes
1
reply
5.7k
views
"Error: 1: Space required after the Public Identifier 2: SystemLiteral " or ' expected" when running PubMedWorcloud
R
updated 6.7 years ago by 43k • written 6.7 years ago by ▴ 50
3
votes
16
replies
2.8k
views
How to map SNPs of C. Albicans using custom data?
R snp
6.7 years ago by nattzy94 ▴ 50
0
votes
1
reply
2.8k
views
Answer: A: How to map SNPs of C. Albicans using custom data?
6.7 years ago by nattzy94 ▴ 50
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