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0
votes
2
replies
886
views
how to get sequences by location when pyfaidx.Fasta(read_long_names=True) creates keys from FastaRecord (dmel r6 genome build)?
selene_sdk pyfaidx fasta python flybase
updated 4 months ago by ★ 1.9k • written 4 months ago by ▴ 290
0
votes
0
replies
886
views
Answer: Answer: how to get sequences by location when pyfaidx.Fasta(read_long_names=True) create
4 months ago by mk ▴ 290
0
votes
0
replies
285
views
use GEOparse to download series supplemental files?
gse geoparse python geoquery geo
4 months ago by mk ▴ 290
3
votes
2
replies
485
views
use bioservices.UniProt (python) to map uniprot accession to [multiple] ensembl ids
bioservices ensembl python uniprot
5 months ago by mk ▴ 290
2
votes
0
replies
485
views
Answer: Answer: use bioservices.UniProt (python) to map uniprot accession to [multiple] ensembl
5 months ago by mk ▴ 290
0
votes
0
replies
2.6k
views
Answer: Answer: GeneActivity without Fragments file in Seurat for Integrating scRNA-seq and scAT
12 months ago by mk ▴ 290
0
votes
0
replies
301
views
pathwaycommons SPARQL endpoint down?
pathway-commons
updated 10 months ago by 43k • written 14 months ago by ▴ 290
0
votes
1
reply
571
views
Any way to search [GEO, etc] by library prep protocol (looking for published single-cell multi-ome data)?
single-cell atac-seq rna-seq multiomics
updated 17 months ago by 141k • written 17 months ago by ▴ 290
0
votes
0
replies
595
views
Comment: Comment: does bioconductor/bioconductor_docker:RELEASE_X_Y install CRAN packages from a f
2.2 years ago by mk ▴ 290
2
votes
2
replies
595
views
does bioconductor/bioconductor_docker:RELEASE_X_Y install CRAN packages from a fixed snapshot?
R Bioconductor docker
2.2 years ago by mk ▴ 290
0
votes
1
reply
4.8k
views
Comment: Comment: seurat `<obj>@assays$RNA@counts` vs `<obj>@assays$RNA@data`?
2.7 years ago by mk ▴ 290
0
votes
0
replies
3.2k
views
Comment: Comment: how to Seurat::RunUMAP() but run reduction="pca" on subset of features?
2.7 years ago by mk ▴ 290
0
votes
0
replies
3.2k
views
Comment: Comment: how to Seurat::RunUMAP() but run reduction="pca" on subset of features?
2.7 years ago by mk ▴ 290
1
vote
4
replies
3.2k
views
how to Seurat::RunUMAP() but run reduction="pca" on subset of features?
seurat pca umap
2.7 years ago by mk ▴ 290
0
votes
1
reply
4.8k
views
Comment: Comment: seurat `<obj>@assays$RNA@counts` vs `<obj>@assays$RNA@data`?
2.7 years ago by mk ▴ 290
1
vote
5
replies
4.8k
views
seurat `<obj>@assays$RNA@counts` vs `<obj>@assays$RNA@data`?
seurat
updated 2.7 years ago by 13k • written 2.7 years ago by ▴ 290
1
vote
0
replies
1.5k
views
Comment: Comment: AnnotationHub::mapIds() cannot find existing ENSG (GEO supplemental data cross-r
2.7 years ago by mk ▴ 290
1
vote
0
replies
1.5k
views
Comment: Comment: AnnotationHub::mapIds() cannot find existing ENSG (GEO supplemental data cross-r
2.7 years ago by mk ▴ 290
5
votes
3
replies
1.5k
views
AnnotationHub::mapIds() cannot find existing ENSG (GEO supplemental data cross-referenced with ensembl.org)
ensg annotationhub mapping
2.7 years ago by mk ▴ 290
0
votes
0
replies
870
views
where to get PBMC (68k) labels?
pbmc single-cell 10x
3.1 years ago by mk ▴ 290
0
votes
0
replies
676
views
database of ligand->receptor->TF(or transcriptional target)
database signaling
updated 3.4 years ago by 20 • written 3.6 years ago by ▴ 290
0
votes
0
replies
971
views
Published data sets using 10x Feature Barcoding?
10x single-cell 10x genomics feature barcoding
3.5 years ago by mk ▴ 290
1
vote
0
replies
4.0k
views
Comment: C: what is the deal with bioconda?
3.5 years ago by mk ▴ 290
8
votes
4
replies
4.0k
views
what is the deal with bioconda?
conda bioconda
updated 2.9 years ago by ▴ 140 • written 3.5 years ago by ▴ 290
0
votes
0
replies
1.0k
views
Comment: C: content negotiation for the ontobee sparql endpoint
updated 3.6 years ago by 43k • written 3.6 years ago by ▴ 290
0
votes
2
replies
1.0k
views
Comment: C: content negotiation for the ontobee sparql endpoint
3.6 years ago by mk ▴ 290
1
vote
1
reply
1.0k
views
Comment: C: content negotiation for the ontobee sparql endpoint
3.6 years ago by mk ▴ 290
4
votes
6
replies
1.0k
views
content negotiation for the ontobee sparql endpoint
ontobee sparql obofoundry
3.6 years ago by mk ▴ 290
3
votes
2
replies
1.1k
views
error when trying to perform a federated query in Pathway Commons SPARQL endpoint
uniprot pathway-commons rdf sparql biopax
updated 10 months ago by 43k • written 3.6 years ago by ▴ 290
0
votes
0
replies
1.1k
views
Comment: C: what is the uniprot RDF entity for "uniprot accession"?
3.6 years ago by mk ▴ 290
3
votes
2
replies
1.1k
views
what is the uniprot RDF entity for "uniprot accession"?
uniprot rdf
updated 3.6 years ago by ▴ 750 • written 3.6 years ago by ▴ 290
1
vote
2
replies
4.0k
views
Creation of cellDataSet in Monocle 2 wants undocumented AnnotatedDataFrame: assayData
monocle cellDataSet ExpressionSet
updated 3.6 years ago by • 0 • written 6.2 years ago by ▴ 290
1
vote
1
reply
881
views
Are federated SPARQL queries pointless with the Pathway Commons BioPAX representation?
ontology BioPAX SPARQL wikipathways reactome
3.6 years ago by mk ▴ 290
1
vote
0
replies
881
views
Answer: A: Are federated SPARQL queries pointless with the Pathway Commons BioPAX represent
3.6 years ago by mk ▴ 290
0
votes
0
replies
926
views
Comment: C: censoring time for ICGC records with no followup or date of death?
3.8 years ago by mk ▴ 290
1
vote
2
replies
926
views
censoring time for ICGC records with no followup or date of death?
icgc survival cancer
3.8 years ago by mk ▴ 290
1
vote
0
replies
844
views
Comment: C: ICGC mRNA sequencing data: where is the documentation on analysis_id?
3.8 years ago by mk ▴ 290
0
votes
0
replies
933
views
Comment: C: Entrez e-utils reference for ensembl ids
3.8 years ago by mk ▴ 290
2
votes
4
replies
844
views
ICGC mRNA sequencing data: where is the documentation on analysis_id?
icgc RNA-Seq
3.8 years ago by mk ▴ 290
2
votes
3
replies
933
views
Entrez e-utils reference for ensembl ids
ensembl entrez e-utils gene
updated 3.8 years ago by 141k • written 3.8 years ago by ▴ 290
0
votes
1
reply
1.0k
views
Comment: C: How long does a dbGaP controlled data access request take (US extramural)?
4.0 years ago by mk ▴ 290
2
votes
4
replies
1.0k
views
How long does a dbGaP controlled data access request take (US extramural)?
TCGA
4.0 years ago by mk ▴ 290
9
votes
8
replies
1.7k
views
GenomicDataCommons request timeouts cases() %>% ... %>% results_all()
GenomicDataCommons bioconductor R http
updated 4.2 years ago by 20 • written 5.2 years ago by ▴ 290
0
votes
0
replies
1.2k
views
scater/scran workflow for batches recompute size factors after MNN?
scater scran r bioconductor
5.0 years ago by mk ▴ 290
40
votes
6
replies
15k
views
7 follow
Mapping Ensembl Gene IDs with dot suffix
ensembl gene biomart bioconductor R
updated 9 months ago by 11k • written 6.1 years ago by ▴ 290
5
votes
2
replies
1.0k
views
How to submit a genomics package with lots of data to CRAN
CRAN R genomics
5.2 years ago by mk ▴ 290
1
vote
0
replies
1.0k
views
Comment: C: How to submit a genomics package with lots of data to CRAN
5.2 years ago by mk ▴ 290
0
votes
0
replies
1.7k
views
Comment: C: GenomicDataCommons request timeouts cases() %>% ... %>% results_all()
5.2 years ago by mk ▴ 290
1
vote
1
reply
1.7k
views
Comment: C: GenomicDataCommons request timeouts cases() %>% ... %>% results_all()
5.2 years ago by mk ▴ 290
0
votes
1
reply
1.7k
views
Answer: A: GenomicDataCommons request timeouts cases() %>% ... %>% results_all()
5.2 years ago by mk ▴ 290
65 results • Page 1 of 2
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