Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
307
views
Finding a list of heritable traits using GCTA
complex heritability traits GCTA
22 months ago by samuelandjw ▴ 250
2
votes
1
reply
535
views
Should we include genotype as covariates when performing EWAS?
methylation EWAS DNA
updated 16 months ago by 43k • written 23 months ago by ▴ 250
2
votes
1
reply
479
views
What are the general strategies in assessing new differentially methylation positions obtained from EWAS?
methylation EWAS DNA
updated 16 months ago by 43k • written 23 months ago by ▴ 250
4
votes
1
reply
452
views
Is it okay to map reads from WES designed for GRCh37 to GRCh38?
exome whole sequencing
updated 23 months ago by 161k • written 23 months ago by ▴ 250
0
votes
0
replies
407
views
How to get list of blood-expressed Fantom 5 enhancers?
fantom5
updated 23 months ago by 43k • written 23 months ago by ▴ 250
0
votes
1
reply
735
views
Comment: Comment: How to access the NCBI Molecular QTL Browser?
24 months ago by samuelandjw ▴ 250
1
vote
3
replies
735
views
How to access the NCBI Molecular QTL Browser?
QTL
updated 24 months ago by 141k • written 24 months ago by ▴ 250
0
votes
0
replies
7.8k
views
Comment: Comment: Any FastQC alternative
2.0 years ago by samuelandjw ▴ 250
0
votes
0
replies
286
views
How to group EWAS traits like GWAS catalog does?
GWAS EWAS
2.0 years ago by samuelandjw ▴ 250
3
votes
1
reply
600
views
reference request: list of DNA methylation sites with consistent methylation levels across individuals in blood
methylation DNA
updated 2.2 years ago by ★ 2.9k • written 2.2 years ago by ▴ 250
0
votes
0
replies
970
views
Answer: Answer: Unable to install dplyr on Fedora 35
2.2 years ago by samuelandjw ▴ 250
1
vote
1
reply
529
views
EWAS: should DNA methylation level be the independent variable or dependent variable?
DNA EWAS methylation
updated 20 months ago by • 0 • written 2.3 years ago by ▴ 250
0
votes
0
replies
1.5k
views
Comment: Comment: Best practice for running GATK VQSR on X chromosome
2.4 years ago by samuelandjw ▴ 250
1
vote
1
reply
575
views
Should we trust genotypes called in simple tandem repeat regions?
sequencing GATK WGS WES
updated 2.4 years ago by 100k • written 2.4 years ago by ▴ 250
0
votes
0
replies
674
views
Comment: Comment: What is the largest freely available dataset of WGS samples?
2.5 years ago by samuelandjw ▴ 250
3
votes
0
replies
512
views
GATK site filtering: when should I use VQSR or hard filtering?
VQSR GATK
2.5 years ago by samuelandjw ▴ 250
1
vote
0
replies
1.5k
views
Answer: Answer: How to subset vcf by sample and write?
2.7 years ago by samuelandjw ▴ 250
1
vote
0
replies
691
views
Comment: Comment: GATK VQSR for human WGS
2.7 years ago by samuelandjw ▴ 250
0
votes
0
replies
2.2k
views
Comment: Comment: Error in plot-vcfstats
2.7 years ago by samuelandjw ▴ 250
2
votes
0
replies
1.4k
views
Comment: Comment: Using vcftools and got Error: Unknown option: --max-missing
2.7 years ago by samuelandjw ▴ 250
0
votes
1
reply
5.9k
views
Comment: Comment: plot-vcfstats
2.7 years ago by samuelandjw ▴ 250
2
votes
1
reply
5.9k
views
Answer: Answer: plot-vcfstats
2.7 years ago by samuelandjw ▴ 250
0
votes
0
replies
1.5k
views
Comment: Comment: Best practice for running GATK VQSR on X chromosome
2.7 years ago by samuelandjw ▴ 250
0
votes
4
replies
1.5k
views
Best practice for running GATK VQSR on X chromosome
WGS GATK WES
2.4 years ago by samuelandjw ▴ 250
0
votes
1
reply
2.4k
views
Comment: Comment: Why is WGS/WES depth of Y chromosome highly variable?
2.7 years ago by samuelandjw ▴ 250
1
vote
0
replies
2.4k
views
Comment: Comment: Why is WGS/WES depth of Y chromosome highly variable?
2.7 years ago by samuelandjw ▴ 250
11
votes
13
replies
2.4k
views
Why is WGS/WES depth of Y chromosome highly variable?
chromosome-Y whole-genome-sequencing
updated 16 months ago by 43k • written 2.7 years ago by ▴ 250
0
votes
1
reply
2.4k
views
Comment: Comment: Why is WGS/WES depth of Y chromosome highly variable?
2.7 years ago by samuelandjw ▴ 250
0
votes
0
replies
6.4k
views
Comment: Comment: GATK genomicsDBimport intervals for WGS
2.8 years ago by samuelandjw ▴ 250
1
vote
0
replies
2.7k
views
Comment: Comment: Why is VCFtools excluding invariable sites?
3.0 years ago by samuelandjw ▴ 250
0
votes
0
replies
6.1k
views
Comment: Comment: plotting PCA PLINK eigenvec output in R
3.0 years ago by samuelandjw ▴ 250
2
votes
1
reply
6.1k
views
Answer: Answer: plotting PCA PLINK eigenvec output in R
3.0 years ago by samuelandjw ▴ 250
0
votes
0
replies
637
views
Convert spanning deletions called by GATK back to regular indels
GATK sequencing
3.5 years ago by samuelandjw ▴ 250
0
votes
0
replies
2.0k
views
Answer: A: How do I plot RFMix results?
3.5 years ago by samuelandjw ▴ 250
0
votes
0
replies
8.8k
views
Comment: C: bwa mem hard clipping
4.4 years ago by samuelandjw ▴ 250
0
votes
0
replies
23k
views
Comment: C: Bwa Mem Method For Mapping, With Or Without Trimming Reads?
4.4 years ago by samuelandjw ▴ 250
0
votes
0
replies
1.7k
views
Comment: C: meaning of Q_bias ADMIXTURE bootstrap
4.6 years ago by samuelandjw ▴ 250
1
vote
2
replies
1.7k
views
meaning of Q_bias ADMIXTURE bootstrap
admixture population ancestry
updated 4.6 years ago by • 0 • written 5.2 years ago by ▴ 250
0
votes
1
reply
1.0k
views
refine population phased haplotypes by pedigree
phasing genotype pedigree population
updated 4.7 years ago by • 0 • written 5.2 years ago by ▴ 250
4
votes
0
replies
1.8k
views
Answer: A: ADMIXTURE haploid mode does not converge
5.1 years ago by samuelandjw ▴ 250
4
votes
1
reply
1.8k
views
ADMIXTURE haploid mode does not converge
admixture population
updated 16 months ago by 43k • written 5.1 years ago by ▴ 250
41 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6