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Comment: Comment: If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
3.1 years ago by LayneSadler ▴ 90
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2.1k
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Comment: Comment: If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
3.1 years ago by LayneSadler ▴ 90
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1
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1.9k
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Comment: Comment: Gene types to use for RNA counts case-control
3.1 years ago by LayneSadler ▴ 90
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1
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1.9k
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Comment: Comment: Gene types to use for RNA counts case-control
3.1 years ago by LayneSadler ▴ 90
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7
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1.9k
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Gene types to use for RNA counts case-control
rna rnaseq tpm
updated 3.1 years ago by 22k • written 3.1 years ago by ▴ 90
0
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2
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3.8k
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Comment: Comment: Why isn't GWAS used in oncology?
3.1 years ago by LayneSadler ▴ 90
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3.8k
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Comment: Comment: Why isn't GWAS used in oncology?
3.1 years ago by LayneSadler ▴ 90
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14
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3.8k
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7 follow
Forum: Why isn't GWAS used in oncology?
gwas association oncology studies somatic cancer
updated 3.1 years ago by 5.1k • written 3.1 years ago by ▴ 90
0
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3.8k
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Comment: Comment: Why isn't GWAS used in oncology?
3.1 years ago by LayneSadler ▴ 90
0
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1
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1.7k
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Comment: Comment: Reference counts for RNA-seq
3.1 years ago by LayneSadler ▴ 90
4
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5
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1.7k
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Reference counts for RNA-seq
expression rna rna-seq tpm transcripts
updated 3.1 years ago by 89k • written 3.1 years ago by ▴ 90
0
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1
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1.3k
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Comment: Comment: What are GL*.* values in chr column of rna seq counts?
3.1 years ago by LayneSadler ▴ 90
3
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3
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1.3k
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What are GL*.* values in chr column of rna seq counts?
reference sequencing rna-seq rna
updated 3.1 years ago by 153k • written 3.1 years ago by ▴ 90
0
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0
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24k
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Comment: Comment: Differences between FPKM and FPKM-UQ files in gene expression analysis
3.2 years ago by LayneSadler ▴ 90
0
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0
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671
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Tool: AIQC - open source framework making deep learning accessible for researchers.
statistics machine multi-omic learning ai
3.7 years ago by LayneSadler ▴ 90
8
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4
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1.6k
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Are small insertions always single-stranded?
indel
updated 4.8 years ago by 20 • written 6.2 years ago by ▴ 90
1
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0
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1.2k
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How do BOLT and SAIGE calculate LD?... with PLINK LD?
plink bolt saige gwas
5.7 years ago by LayneSadler ▴ 90
0
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0
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976
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Comment: C: Noncoding annotations for WGS?
5.8 years ago by LayneSadler ▴ 90
0
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2
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976
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Noncoding annotations for WGS?
noncoding intron annotation
5.8 years ago by LayneSadler ▴ 90
6
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5
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2.5k
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VCF - does mother or father come first in the comma separated ALT
vcf gvcf heterozygous
updated 5.9 years ago by 20 • written 6.2 years ago by ▴ 90
0
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2
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1.4k
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How rare are somatic mutations?
tumor mutect varscan somatic SNP
5.9 years ago by LayneSadler ▴ 90
0
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0
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1.5k
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Comment: C: Are SV tools as thorough in CNV detection as CNVkit?
6.1 years ago by LayneSadler ▴ 90
0
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1
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1.5k
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Are SV tools as thorough in CNV detection as CNVkit?
cnv sv cnvkit manta parliament
6.1 years ago by LayneSadler ▴ 90
0
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0
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3.8k
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Comment: C: VCF - what are overlapping variants?
6.2 years ago by LayneSadler ▴ 90
0
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1
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1.6k
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Comment: C: Are small insertions always single-stranded?
6.2 years ago by LayneSadler ▴ 90
0
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1
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3.8k
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Comment: C: VCF - what are overlapping variants?
6.2 years ago by LayneSadler ▴ 90
8
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4
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3.8k
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VCF - what are overlapping variants?
vcf
updated 6.2 years ago by 166k • written 6.2 years ago by ▴ 90
0
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1
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2.5k
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Comment: C: VCF - does mother or father come first in the comma separated ALT
6.2 years ago by LayneSadler ▴ 90
0
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0
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2.5k
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Comment: A: VCF - does mother or father come first in the comma separated ALT
6.2 years ago by LayneSadler ▴ 90
0
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0
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2.5k
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Comment: C: VCF - does mother or father come first in the comma separated ALT
6.2 years ago by LayneSadler ▴ 90
0
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1
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1.4k
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Comment: C: gVCF what is a "break-end replacement"
6.2 years ago by LayneSadler ▴ 90
2
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3
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1.4k
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gVCF what is a "break-end replacement"
gvcf
6.2 years ago by LayneSadler ▴ 90
0
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0
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1.4k
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PubSub or workflows or both?
workflow pubsub events python
6.8 years ago by LayneSadler ▴ 90
0
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1
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31k
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Comment: A: Creating workflows with snakemake and conda
6.8 years ago by LayneSadler ▴ 90
3
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1
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1.1k
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Does vcf spec indicate cnv duplication of snps?
vcf cnv snp snv ngs
7.2 years ago by LayneSadler ▴ 90
17
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9
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3.6k
views
6 follow
Workflows! Where is the code?
cwl wdl workflows
updated 7.3 years ago by ★ 1.9k • written 7.3 years ago by ▴ 90
0
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1
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3.6k
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Comment: C: Workflows! Where is the code?
7.3 years ago by LayneSadler ▴ 90
4
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2
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1.8k
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Encrypting BAM files
gdpr hipaa encryption
updated 7.5 years ago by 20 • written 7.6 years ago by ▴ 90
0
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1
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3.4k
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Blog: Clarifying the concept of clinical annotation vs bioinformatic annotation
variant-annotation reference-data
updated 2.6 years ago by 45k • written 7.8 years ago by ▴ 90
89 results • Page 2 of 2
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