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Comment: Comment: how to decide the if the IDR result is good or not
7 months ago by dew ▴ 10
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412
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how to decide the if the IDR result is good or not
IDR ATAC-seq
updated 7 months ago by 40k • written 7 months ago by ▴ 10
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532
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Comment: Comment: Is there any recommended RNAseq ranking for DEGs/driver genes
8 months ago by dew ▴ 10
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532
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Is there any recommended RNAseq ranking for DEGs/driver genes
Driver RNA-Seq Ranking
8 months ago by dew ▴ 10
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1.3k
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Comment: Comment: how to speed up snakemake workflow
8 months ago by dew ▴ 10
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7
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1.3k
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how to speed up snakemake workflow
workflow RNA-Seq snakemake
8 months ago by dew ▴ 10
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1.3k
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Comment: Comment: how to speed up snakemake workflow
8 months ago by dew ▴ 10
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1.3k
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Comment: Comment: how to speed up snakemake workflow
8 months ago by dew ▴ 10
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536
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Comment: Comment: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
9 months ago by dew ▴ 10
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536
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Comment: Comment: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
9 months ago by dew ▴ 10
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4
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536
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Are ther any bulk RNAseq pipeline recommend which including the downstream function annotation
RNA-Seq
updated 9 months ago by 40k • written 9 months ago by ▴ 10
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0
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390
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Comment: Comment: Driver genes and top 10/20/etc DEGs
9 months ago by dew ▴ 10
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2
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390
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Driver genes and top 10/20/etc DEGs
RNAseq Driver DEGs genes
9 months ago by dew ▴ 10
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0
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357
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Comment: Comment: how to deal with strong sample heterogenous effects in RNAseq
9 months ago by dew ▴ 10
2
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2
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357
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how to deal with strong sample heterogenous effects in RNAseq
batch-effect RNA-Seq
updated 9 months ago by 40k • written 9 months ago by ▴ 10
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274
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DWLS error Dmat and dvec are incompatible!
deconvolution RNA-Seq DWLS
9 months ago by dew ▴ 10
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0
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435
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Comment: Comment: recommend tools for scRNAseq cell type annotation
9 months ago by dew ▴ 10
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2
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435
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recommend tools for scRNAseq cell type annotation
type annotation cell scRNAseq
9 months ago by dew ▴ 10
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1
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682
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Comment: Comment: possible reasons that very few significant DEGs from RNAseq
10 months ago by dew ▴ 10
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682
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Comment: Comment: possible reasons that very few significant DEGs from RNAseq
10 months ago by dew ▴ 10
0
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1
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682
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Comment: Comment: possible reasons that very few significant DEGs from RNAseq
10 months ago by dew ▴ 10
8
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8
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682
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possible reasons that very few significant DEGs from RNAseq
RNA-Seq DEGs sigificant
updated 10 months ago by 76k • written 10 months ago by ▴ 10
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382
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Comment: Comment: how to decide the strandness of the RNAseq data
10 months ago by dew ▴ 10
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2
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382
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how to decide the strandness of the RNAseq data
strandness RNA-Seq
10 months ago by dew ▴ 10
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0
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236
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Like hood ration test vs t test
t-test RNA-Seq LRT
updated 9 months ago by 40k • written 12 months ago by ▴ 10
2
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1
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265
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DEGs generate when has a background sample
RNA-Seq DEGs
updated 12 months ago by 76k • written 12 months ago by ▴ 10
3
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4
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657
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how much difference between raw counts value and the TPM value
RNA-Seq TPM
updated 12 months ago by 76k • written 12 months ago by ▴ 10
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1
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657
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Comment: Comment: how much difference between raw counts value and the TPM value
12 months ago by dew ▴ 10
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0
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204
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how to deal with correlation map with multi repeats for one group
repeats map correlation RNA-Seq multi
13 months ago by dew ▴ 10
2
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4
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741
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correlation among RNAseq and proteomics analysis
RNA-Seq proteomics analysis correlation
updated 13 months ago by ▴ 390 • written 13 months ago by ▴ 10
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0
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741
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Comment: Comment: correlation among RNAseq and proteomics analysis
13 months ago by dew ▴ 10
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0
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371
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Comment: Comment: differential expressed proteins cutoff threshold
13 months ago by dew ▴ 10
2
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2
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371
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differential expressed proteins cutoff threshold
expressed differential proteomics
13 months ago by dew ▴ 10
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0
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255
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multiple rows for same peptide with different modifications(combinations) in proteomics data
proteomics
14 months ago by dew ▴ 10
6
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3
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729
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Top/best RNAseq workflow including anlaysis results for function annotation
RNA-Seq annotation workflow function
updated 14 months ago by ▴ 60 • written 14 months ago by ▴ 10
2
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1
reply
413
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choose normalized counts or log2FC when do correlation in RNAseq
RNA-Seq analysis correlation
updated 14 months ago by ▴ 70 • written 14 months ago by ▴ 10
1
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1
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297
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heatmap with multi NA/0 value
RNA-Seq NA heatmap
updated 14 months ago by 40k • written 14 months ago by ▴ 10
1
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1
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357
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TPM TMM DESeq2 normalization which choose to draw the heatmap for all samples
RNA-Seq normalization heatmap
updated 14 months ago by 76k • written 14 months ago by ▴ 10
4
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3
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710
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Number of gene for display in the complex heatmap
RNA-Seq complex heatmap
15 months ago by dew ▴ 10
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0
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710
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Answer: Answer: Number of gene for display in the complex heatmap
15 months ago by dew ▴ 10
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0
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643
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Comment: Comment: protein ID convert to gene name ID
15 months ago by dew ▴ 10
5
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6
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643
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protein ID convert to gene name ID
proteomics
updated 10 weeks ago by 40k • written 15 months ago by ▴ 10
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0
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643
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Comment: Comment: protein ID convert to gene name ID
15 months ago by dew ▴ 10
0
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0
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9.4k
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Comment: Comment: Working with GTEX dataset
updated 9 months ago by 40k • written 16 months ago by ▴ 10
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0
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306
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C7 msigdb immune annotation results digging
annotation Misgdb RNA-Seq
16 months ago by dew ▴ 10
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0
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679
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Comment: Comment: DESeq2 after GSVA "some values in assay are negative"
16 months ago by dew ▴ 10
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2
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679
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DESeq2 after GSVA "some values in assay are negative"
GSVA DESeq2 RNA-seq
16 months ago by dew ▴ 10
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540
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Comment: Comment: featureCounts results has many psedugenes(ENSG***) together with genes
17 months ago by dew ▴ 10
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1
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540
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Comment: Comment: featureCounts results has many psedugenes(ENSG***) together with genes
17 months ago by dew ▴ 10
3
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4
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540
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featureCounts results has many psedugenes(ENSG***) together with genes
featureCounts RNA-Seq
updated 17 months ago by 6.1k • written 17 months ago by ▴ 10
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