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comments
0
votes
0
replies
665
views
Comment:
Comment: how to decide the if the IDR result is good or not
14 months ago by
dew
▴ 10
1
vote
2
replies
665
views
how to decide the if the IDR result is good or not
IDR
ATAC-seq
updated 14 months ago by
Ram
43k • written 14 months ago by
dew
▴ 10
0
votes
0
replies
662
views
Comment:
Comment: Is there any recommended RNAseq ranking for DEGs/driver genes
15 months ago by
dew
▴ 10
1
vote
2
replies
662
views
Is there any recommended RNAseq ranking for DEGs/driver genes
Driver
RNA-Seq
Ranking
15 months ago by
dew
▴ 10
0
votes
0
replies
1.7k
views
Comment:
Comment: how to speed up snakemake workflow
15 months ago by
dew
▴ 10
6
votes
7
replies
1.7k
views
how to speed up snakemake workflow
workflow
RNA-Seq
snakemake
15 months ago by
dew
▴ 10
0
votes
0
replies
1.7k
views
Comment:
Comment: how to speed up snakemake workflow
16 months ago by
dew
▴ 10
0
votes
1
reply
1.7k
views
Comment:
Comment: how to speed up snakemake workflow
16 months ago by
dew
▴ 10
0
votes
0
replies
713
views
Comment:
Comment: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
16 months ago by
dew
▴ 10
0
votes
0
replies
713
views
Comment:
Comment: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
16 months ago by
dew
▴ 10
3
votes
4
replies
713
views
Are ther any bulk RNAseq pipeline recommend which including the downstream function annotation
RNA-Seq
updated 16 months ago by
Ram
43k • written 16 months ago by
dew
▴ 10
0
votes
0
replies
526
views
Comment:
Comment: Driver genes and top 10/20/etc DEGs
16 months ago by
dew
▴ 10
1
vote
2
replies
526
views
Driver genes and top 10/20/etc DEGs
RNAseq
Driver
DEGs
genes
16 months ago by
dew
▴ 10
0
votes
0
replies
471
views
Comment:
Comment: how to deal with strong sample heterogenous effects in RNAseq
16 months ago by
dew
▴ 10
2
votes
2
replies
471
views
how to deal with strong sample heterogenous effects in RNAseq
batch-effect
RNA-Seq
updated 16 months ago by
Ram
43k • written 16 months ago by
dew
▴ 10
0
votes
0
replies
397
views
DWLS error Dmat and dvec are incompatible!
deconvolution
RNA-Seq
DWLS
16 months ago by
dew
▴ 10
0
votes
0
replies
587
views
Comment:
Comment: recommend tools for scRNAseq cell type annotation
16 months ago by
dew
▴ 10
1
vote
2
replies
587
views
recommend tools for scRNAseq cell type annotation
type
annotation
cell
scRNAseq
16 months ago by
dew
▴ 10
0
votes
1
reply
964
views
Comment:
Comment: possible reasons that very few significant DEGs from RNAseq
17 months ago by
dew
▴ 10
0
votes
0
replies
964
views
Comment:
Comment: possible reasons that very few significant DEGs from RNAseq
17 months ago by
dew
▴ 10
0
votes
1
reply
964
views
Comment:
Comment: possible reasons that very few significant DEGs from RNAseq
17 months ago by
dew
▴ 10
8
votes
8
replies
964
views
possible reasons that very few significant DEGs from RNAseq
RNA-Seq
DEGs
sigificant
updated 17 months ago by
ATpoint
82k • written 17 months ago by
dew
▴ 10
0
votes
0
replies
509
views
Comment:
Comment: how to decide the strandness of the RNAseq data
17 months ago by
dew
▴ 10
1
vote
2
replies
509
views
how to decide the strandness of the RNAseq data
strandness
RNA-Seq
17 months ago by
dew
▴ 10
0
votes
0
replies
317
views
Like hood ration test vs t test
t-test
RNA-Seq
LRT
updated 16 months ago by
Ram
43k • written 19 months ago by
dew
▴ 10
2
votes
1
reply
352
views
DEGs generate when has a background sample
RNA-Seq
DEGs
updated 19 months ago by
ATpoint
82k • written 19 months ago by
dew
▴ 10
3
votes
4
replies
901
views
how much difference between raw counts value and the TPM value
RNA-Seq
TPM
updated 19 months ago by
ATpoint
82k • written 19 months ago by
dew
▴ 10
0
votes
1
reply
901
views
Comment:
Comment: how much difference between raw counts value and the TPM value
19 months ago by
dew
▴ 10
0
votes
0
replies
281
views
how to deal with correlation map with multi repeats for one group
repeats
map
correlation
RNA-Seq
multi
20 months ago by
dew
▴ 10
2
votes
4
replies
936
views
correlation among RNAseq and proteomics analysis
RNA-Seq
proteomics
analysis
correlation
updated 21 months ago by
tomas4482
▴ 390 • written 21 months ago by
dew
▴ 10
0
votes
0
replies
936
views
Comment:
Comment: correlation among RNAseq and proteomics analysis
21 months ago by
dew
▴ 10
0
votes
0
replies
486
views
Comment:
Comment: differential expressed proteins cutoff threshold
21 months ago by
dew
▴ 10
2
votes
2
replies
486
views
differential expressed proteins cutoff threshold
expressed
differential
proteomics
21 months ago by
dew
▴ 10
0
votes
0
replies
314
views
multiple rows for same peptide with different modifications(combinations) in proteomics data
proteomics
21 months ago by
dew
▴ 10
6
votes
3
replies
931
views
Top/best RNAseq workflow including anlaysis results for function annotation
RNA-Seq
annotation
workflow
function
updated 21 months ago by
MB
▴ 60 • written 21 months ago by
dew
▴ 10
2
votes
1
reply
560
views
choose normalized counts or log2FC when do correlation in RNAseq
RNA-Seq
analysis
correlation
updated 21 months ago by
bioinfo_ga
▴ 70 • written 21 months ago by
dew
▴ 10
1
vote
1
reply
386
views
heatmap with multi NA/0 value
RNA-Seq
NA
heatmap
updated 21 months ago by
Ram
43k • written 21 months ago by
dew
▴ 10
1
vote
1
reply
445
views
TPM TMM DESeq2 normalization which choose to draw the heatmap for all samples
RNA-Seq
normalization
heatmap
updated 22 months ago by
ATpoint
82k • written 22 months ago by
dew
▴ 10
4
votes
3
replies
994
views
Number of gene for display in the complex heatmap
RNA-Seq
complex
heatmap
22 months ago by
dew
▴ 10
0
votes
0
replies
994
views
Answer:
Answer: Number of gene for display in the complex heatmap
22 months ago by
dew
▴ 10
0
votes
0
replies
879
views
Comment:
Comment: protein ID convert to gene name ID
22 months ago by
dew
▴ 10
5
votes
6
replies
879
views
protein ID convert to gene name ID
proteomics
updated 9 months ago by
Ram
43k • written 22 months ago by
dew
▴ 10
0
votes
0
replies
879
views
Comment:
Comment: protein ID convert to gene name ID
22 months ago by
dew
▴ 10
0
votes
0
replies
9.8k
views
Comment:
Comment: Working with GTEX dataset
updated 16 months ago by
Ram
43k • written 23 months ago by
dew
▴ 10
0
votes
0
replies
372
views
C7 msigdb immune annotation results digging
annotation
Misgdb
RNA-Seq
23 months ago by
dew
▴ 10
0
votes
0
replies
961
views
Comment:
Comment: DESeq2 after GSVA "some values in assay are negative"
23 months ago by
dew
▴ 10
1
vote
2
replies
961
views
DESeq2 after GSVA "some values in assay are negative"
GSVA
DESeq2
RNA-seq
23 months ago by
dew
▴ 10
0
votes
0
replies
715
views
Comment:
Comment: featureCounts results has many psedugenes(ENSG***) together with genes
24 months ago by
dew
▴ 10
0
votes
1
reply
715
views
Comment:
Comment: featureCounts results has many psedugenes(ENSG***) together with genes
24 months ago by
dew
▴ 10
3
votes
4
replies
715
views
featureCounts results has many psedugenes(ENSG***) together with genes
featureCounts
RNA-Seq
updated 24 months ago by
iraun
6.2k • written 24 months ago by
dew
▴ 10
71 results • Page
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