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Comment: Comment: how to decide the if the IDR result is good or not
2.7 years ago by dew ▴ 10
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2
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1.1k
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how to decide the if the IDR result is good or not
IDR ATAC-seq
updated 2.7 years ago by 45k • written 2.7 years ago by ▴ 10
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1.1k
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Comment: Comment: Is there any recommended RNAseq ranking for DEGs/driver genes
2.8 years ago by dew ▴ 10
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2
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1.1k
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Is there any recommended RNAseq ranking for DEGs/driver genes
Driver RNA-Seq Ranking
2.8 years ago by dew ▴ 10
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0
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2.8k
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Comment: Comment: how to speed up snakemake workflow
2.8 years ago by dew ▴ 10
6
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7
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2.8k
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how to speed up snakemake workflow
workflow RNA-Seq snakemake
2.8 years ago by dew ▴ 10
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0
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2.8k
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Comment: Comment: how to speed up snakemake workflow
2.9 years ago by dew ▴ 10
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1
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2.8k
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Comment: Comment: how to speed up snakemake workflow
2.9 years ago by dew ▴ 10
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0
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1.2k
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Comment: Comment: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
2.9 years ago by dew ▴ 10
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0
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1.2k
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Comment: Comment: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
2.9 years ago by dew ▴ 10
3
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4
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1.2k
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Are ther any bulk RNAseq pipeline recommend which including the downstream function annotation
RNA-Seq
updated 2.9 years ago by 45k • written 2.9 years ago by ▴ 10
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0
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923
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Comment: Comment: Driver genes and top 10/20/etc DEGs
2.9 years ago by dew ▴ 10
1
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2
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923
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Driver genes and top 10/20/etc DEGs
RNAseq Driver DEGs genes
2.9 years ago by dew ▴ 10
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0
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845
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Comment: Comment: how to deal with strong sample heterogenous effects in RNAseq
2.9 years ago by dew ▴ 10
2
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2
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845
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how to deal with strong sample heterogenous effects in RNAseq
batch-effect RNA-Seq
updated 2.9 years ago by 45k • written 2.9 years ago by ▴ 10
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1
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949
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DWLS error Dmat and dvec are incompatible!
deconvolution RNA-Seq DWLS
updated 7 months ago by ▴ 10 • written 2.9 years ago by ▴ 10
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0
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971
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Comment: Comment: recommend tools for scRNAseq cell type annotation
2.9 years ago by dew ▴ 10
1
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2
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971
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recommend tools for scRNAseq cell type annotation
type annotation cell scRNAseq
2.9 years ago by dew ▴ 10
0
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1
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1.8k
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Comment: Comment: possible reasons that very few significant DEGs from RNAseq
3.0 years ago by dew ▴ 10
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0
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1.8k
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Comment: Comment: possible reasons that very few significant DEGs from RNAseq
3.0 years ago by dew ▴ 10
0
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1
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1.8k
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Comment: Comment: possible reasons that very few significant DEGs from RNAseq
3.0 years ago by dew ▴ 10
8
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8
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1.8k
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possible reasons that very few significant DEGs from RNAseq
RNA-Seq DEGs sigificant
updated 3.0 years ago by 90k • written 3.0 years ago by ▴ 10
0
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0
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955
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Comment: Comment: how to decide the strandness of the RNAseq data
3.0 years ago by dew ▴ 10
1
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2
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955
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how to decide the strandness of the RNAseq data
strandness RNA-Seq
3.0 years ago by dew ▴ 10
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0
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581
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Like hood ration test vs t test
t-test RNA-Seq LRT
updated 2.9 years ago by 45k • written 3.1 years ago by ▴ 10
2
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1
reply
659
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DEGs generate when has a background sample
RNA-Seq DEGs
updated 3.2 years ago by 90k • written 3.2 years ago by ▴ 10
3
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4
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1.6k
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how much difference between raw counts value and the TPM value
RNA-Seq TPM
updated 3.2 years ago by 90k • written 3.2 years ago by ▴ 10
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1
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1.6k
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Comment: Comment: how much difference between raw counts value and the TPM value
3.2 years ago by dew ▴ 10
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0
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566
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how to deal with correlation map with multi repeats for one group
repeats map correlation RNA-Seq multi
3.2 years ago by dew ▴ 10
2
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4
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1.7k
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correlation among RNAseq and proteomics analysis
RNA-Seq proteomics analysis correlation
updated 3.3 years ago by ▴ 430 • written 3.3 years ago by ▴ 10
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0
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1.7k
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Comment: Comment: correlation among RNAseq and proteomics analysis
3.3 years ago by dew ▴ 10
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0
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872
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Comment: Comment: differential expressed proteins cutoff threshold
3.3 years ago by dew ▴ 10
2
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2
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872
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differential expressed proteins cutoff threshold
expressed differential proteomics
3.3 years ago by dew ▴ 10
0
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0
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508
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multiple rows for same peptide with different modifications(combinations) in proteomics data
proteomics
3.3 years ago by dew ▴ 10
6
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3
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1.7k
views
Top/best RNAseq workflow including anlaysis results for function annotation
RNA-Seq annotation workflow function
updated 3.3 years ago by ▴ 60 • written 3.3 years ago by ▴ 10
2
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1
reply
962
views
choose normalized counts or log2FC when do correlation in RNAseq
RNA-Seq analysis correlation
updated 3.3 years ago by ▴ 70 • written 3.3 years ago by ▴ 10
1
vote
1
reply
635
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heatmap with multi NA/0 value
RNA-Seq NA heatmap
updated 3.3 years ago by 45k • written 3.3 years ago by ▴ 10
1
vote
1
reply
722
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TPM TMM DESeq2 normalization which choose to draw the heatmap for all samples
RNA-Seq normalization heatmap
updated 3.4 years ago by 90k • written 3.4 years ago by ▴ 10
4
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3
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1.9k
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Number of gene for display in the complex heatmap
RNA-Seq complex heatmap
3.4 years ago by dew ▴ 10
0
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0
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1.9k
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Answer: Answer: Number of gene for display in the complex heatmap
3.4 years ago by dew ▴ 10
0
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0
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1.7k
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Comment: Comment: protein ID convert to gene name ID
3.4 years ago by dew ▴ 10
5
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6
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1.7k
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protein ID convert to gene name ID
proteomics
updated 2.3 years ago by 45k • written 3.4 years ago by ▴ 10
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0
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1.7k
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Comment: Comment: protein ID convert to gene name ID
3.4 years ago by dew ▴ 10
0
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0
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12k
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Comment: Comment: Working with GTEX dataset
updated 2.9 years ago by 45k • written 3.5 years ago by ▴ 10
0
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0
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572
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C7 msigdb immune annotation results digging
annotation Misgdb RNA-Seq
3.5 years ago by dew ▴ 10
0
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0
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1.6k
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Comment: Comment: DESeq2 after GSVA "some values in assay are negative"
3.5 years ago by dew ▴ 10
1
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2
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1.6k
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DESeq2 after GSVA "some values in assay are negative"
GSVA DESeq2 RNA-seq
3.5 years ago by dew ▴ 10
0
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0
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1.3k
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Comment: Comment: featureCounts results has many psedugenes(ENSG***) together with genes
3.5 years ago by dew ▴ 10
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1
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1.3k
views
Comment: Comment: featureCounts results has many psedugenes(ENSG***) together with genes
3.5 years ago by dew ▴ 10
3
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4
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1.3k
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featureCounts results has many psedugenes(ENSG***) together with genes
featureCounts RNA-Seq
updated 3.5 years ago by 6.2k • written 3.5 years ago by ▴ 10
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