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questions
1
vote
2
replies
675
views
how to decide the if the IDR result is good or not
IDR
ATAC-seq
updated 14 months ago by
Ram
43k • written 14 months ago by
dew
▴ 10
1
vote
2
replies
665
views
Is there any recommended RNAseq ranking for DEGs/driver genes
Driver
RNA-Seq
Ranking
15 months ago by
dew
▴ 10
6
votes
7
replies
1.7k
views
how to speed up snakemake workflow
workflow
RNA-Seq
snakemake
16 months ago by
dew
▴ 10
3
votes
4
replies
728
views
Are ther any bulk RNAseq pipeline recommend which including the downstream function annotation
RNA-Seq
updated 16 months ago by
Ram
43k • written 16 months ago by
dew
▴ 10
1
vote
2
replies
531
views
Driver genes and top 10/20/etc DEGs
RNAseq
Driver
DEGs
genes
16 months ago by
dew
▴ 10
2
votes
2
replies
477
views
how to deal with strong sample heterogenous effects in RNAseq
batch-effect
RNA-Seq
updated 17 months ago by
Ram
43k • written 17 months ago by
dew
▴ 10
0
votes
0
replies
400
views
DWLS error Dmat and dvec are incompatible!
deconvolution
RNA-Seq
DWLS
17 months ago by
dew
▴ 10
1
vote
2
replies
593
views
recommend tools for scRNAseq cell type annotation
type
annotation
cell
scRNAseq
17 months ago by
dew
▴ 10
8
votes
8
replies
972
views
possible reasons that very few significant DEGs from RNAseq
RNA-Seq
DEGs
sigificant
updated 17 months ago by
ATpoint
82k • written 17 months ago by
dew
▴ 10
1
vote
2
replies
514
views
how to decide the strandness of the RNAseq data
strandness
RNA-Seq
18 months ago by
dew
▴ 10
0
votes
0
replies
319
views
Like hood ration test vs t test
t-test
RNA-Seq
LRT
updated 16 months ago by
Ram
43k • written 19 months ago by
dew
▴ 10
2
votes
1
reply
359
views
DEGs generate when has a background sample
RNA-Seq
DEGs
updated 19 months ago by
ATpoint
82k • written 19 months ago by
dew
▴ 10
3
votes
4
replies
914
views
how much difference between raw counts value and the TPM value
RNA-Seq
TPM
updated 20 months ago by
ATpoint
82k • written 20 months ago by
dew
▴ 10
0
votes
0
replies
284
views
how to deal with correlation map with multi repeats for one group
repeats
map
correlation
RNA-Seq
multi
20 months ago by
dew
▴ 10
2
votes
4
replies
948
views
correlation among RNAseq and proteomics analysis
RNA-Seq
proteomics
analysis
correlation
updated 21 months ago by
tomas4482
▴ 390 • written 21 months ago by
dew
▴ 10
2
votes
2
replies
493
views
differential expressed proteins cutoff threshold
expressed
differential
proteomics
21 months ago by
dew
▴ 10
0
votes
0
replies
316
views
multiple rows for same peptide with different modifications(combinations) in proteomics data
proteomics
21 months ago by
dew
▴ 10
6
votes
3
replies
943
views
Top/best RNAseq workflow including anlaysis results for function annotation
RNA-Seq
annotation
workflow
function
updated 21 months ago by
MB
▴ 60 • written 22 months ago by
dew
▴ 10
2
votes
1
reply
566
views
choose normalized counts or log2FC when do correlation in RNAseq
RNA-Seq
analysis
correlation
updated 21 months ago by
bioinfo_ga
▴ 70 • written 21 months ago by
dew
▴ 10
1
vote
1
reply
390
views
heatmap with multi NA/0 value
RNA-Seq
NA
heatmap
updated 22 months ago by
Ram
43k • written 22 months ago by
dew
▴ 10
1
vote
1
reply
450
views
TPM TMM DESeq2 normalization which choose to draw the heatmap for all samples
RNA-Seq
normalization
heatmap
updated 22 months ago by
ATpoint
82k • written 22 months ago by
dew
▴ 10
4
votes
3
replies
1.0k
views
Number of gene for display in the complex heatmap
RNA-Seq
complex
heatmap
22 months ago by
dew
▴ 10
5
votes
6
replies
891
views
protein ID convert to gene name ID
proteomics
updated 9 months ago by
Ram
43k • written 22 months ago by
dew
▴ 10
0
votes
0
replies
376
views
C7 msigdb immune annotation results digging
annotation
Misgdb
RNA-Seq
23 months ago by
dew
▴ 10
1
vote
2
replies
968
views
DESeq2 after GSVA "some values in assay are negative"
GSVA
DESeq2
RNA-seq
23 months ago by
dew
▴ 10
3
votes
4
replies
727
views
featureCounts results has many psedugenes(ENSG***) together with genes
featureCounts
RNA-Seq
updated 2.0 years ago by
iraun
6.2k • written 2.0 years ago by
dew
▴ 10
4
votes
7
replies
915
views
ncRNA mapping rate to the hg38.nc.fasta
RNAseq
rate
mapping
ncRNA
bulk
2.0 years ago by
dew
▴ 10
0
votes
0
replies
292
views
strange QQ plots
QQplot
RNA-Seq
limma
2.1 years ago by
dew
▴ 10
0
votes
6
replies
1.6k
views
GSEA run with just RNK file
enrichment
analysis
updated 2.1 years ago by
jv
★ 1.8k • written 2.2 years ago by
dew
▴ 10
1
vote
1
reply
534
views
RNAseq data with no biological replicates
biological
RNA-Seq
replicates
2.2 years ago by
dew
▴ 10
0
votes
2
replies
615
views
gene numbers after tximport summarizeToGene
RNA-Seq
2.3 years ago by
dew
▴ 10
0
votes
0
replies
289
views
Drug affects at different time points
RNA-Seq
2.3 years ago by
dew
▴ 10
0
votes
0
replies
784
views
whole length hg38 genomic repeat annotation file
RNA-Seq
3.1 years ago by
dew
▴ 10
0
votes
2
replies
683
views
trim scripts help
sequencing
updated 3.8 years ago by
h.mon
35k • written 3.8 years ago by
dew
▴ 10
34 results • Page
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