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688
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Comment: Comment: how to decide the if the IDR result is good or not
15 months ago by dew ▴ 10
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2
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688
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how to decide the if the IDR result is good or not
IDR ATAC-seq
updated 15 months ago by 44k • written 15 months ago by ▴ 10
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0
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676
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Comment: Comment: Is there any recommended RNAseq ranking for DEGs/driver genes
16 months ago by dew ▴ 10
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2
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676
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Is there any recommended RNAseq ranking for DEGs/driver genes
Driver RNA-Seq Ranking
16 months ago by dew ▴ 10
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0
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1.8k
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Comment: Comment: how to speed up snakemake workflow
16 months ago by dew ▴ 10
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7
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1.8k
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how to speed up snakemake workflow
workflow RNA-Seq snakemake
16 months ago by dew ▴ 10
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0
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1.8k
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Comment: Comment: how to speed up snakemake workflow
17 months ago by dew ▴ 10
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1
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1.8k
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Comment: Comment: how to speed up snakemake workflow
17 months ago by dew ▴ 10
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0
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741
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Comment: Comment: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
17 months ago by dew ▴ 10
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0
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741
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Comment: Comment: Are ther any bulk RNAseq pipeline recommend which including the downstream funct
17 months ago by dew ▴ 10
3
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4
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741
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Are ther any bulk RNAseq pipeline recommend which including the downstream function annotation
RNA-Seq
updated 17 months ago by 44k • written 17 months ago by ▴ 10
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0
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543
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Comment: Comment: Driver genes and top 10/20/etc DEGs
17 months ago by dew ▴ 10
1
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2
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543
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Driver genes and top 10/20/etc DEGs
RNAseq Driver DEGs genes
17 months ago by dew ▴ 10
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0
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491
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Comment: Comment: how to deal with strong sample heterogenous effects in RNAseq
17 months ago by dew ▴ 10
2
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2
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491
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how to deal with strong sample heterogenous effects in RNAseq
batch-effect RNA-Seq
updated 17 months ago by 44k • written 17 months ago by ▴ 10
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0
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410
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DWLS error Dmat and dvec are incompatible!
deconvolution RNA-Seq DWLS
17 months ago by dew ▴ 10
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0
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601
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Comment: Comment: recommend tools for scRNAseq cell type annotation
18 months ago by dew ▴ 10
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2
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601
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recommend tools for scRNAseq cell type annotation
type annotation cell scRNAseq
18 months ago by dew ▴ 10
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1
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1.0k
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Comment: Comment: possible reasons that very few significant DEGs from RNAseq
18 months ago by dew ▴ 10
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0
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1.0k
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Comment: Comment: possible reasons that very few significant DEGs from RNAseq
18 months ago by dew ▴ 10
0
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1
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1.0k
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Comment: Comment: possible reasons that very few significant DEGs from RNAseq
18 months ago by dew ▴ 10
8
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8
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1.0k
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possible reasons that very few significant DEGs from RNAseq
RNA-Seq DEGs sigificant
updated 18 months ago by 82k • written 18 months ago by ▴ 10
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0
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526
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Comment: Comment: how to decide the strandness of the RNAseq data
18 months ago by dew ▴ 10
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2
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526
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how to decide the strandness of the RNAseq data
strandness RNA-Seq
18 months ago by dew ▴ 10
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0
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325
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Like hood ration test vs t test
t-test RNA-Seq LRT
updated 17 months ago by 44k • written 20 months ago by ▴ 10
2
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1
reply
367
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DEGs generate when has a background sample
RNA-Seq DEGs
updated 20 months ago by 82k • written 20 months ago by ▴ 10
3
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4
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942
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how much difference between raw counts value and the TPM value
RNA-Seq TPM
updated 20 months ago by 82k • written 20 months ago by ▴ 10
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1
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942
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Comment: Comment: how much difference between raw counts value and the TPM value
20 months ago by dew ▴ 10
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0
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291
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how to deal with correlation map with multi repeats for one group
repeats map correlation RNA-Seq multi
21 months ago by dew ▴ 10
2
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4
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964
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correlation among RNAseq and proteomics analysis
RNA-Seq proteomics analysis correlation
updated 22 months ago by ▴ 400 • written 22 months ago by ▴ 10
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0
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964
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Comment: Comment: correlation among RNAseq and proteomics analysis
22 months ago by dew ▴ 10
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0
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505
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Comment: Comment: differential expressed proteins cutoff threshold
22 months ago by dew ▴ 10
2
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2
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505
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differential expressed proteins cutoff threshold
expressed differential proteomics
22 months ago by dew ▴ 10
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0
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322
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multiple rows for same peptide with different modifications(combinations) in proteomics data
proteomics
22 months ago by dew ▴ 10
6
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3
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968
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Top/best RNAseq workflow including anlaysis results for function annotation
RNA-Seq annotation workflow function
updated 22 months ago by ▴ 60 • written 22 months ago by ▴ 10
2
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1
reply
575
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choose normalized counts or log2FC when do correlation in RNAseq
RNA-Seq analysis correlation
updated 22 months ago by ▴ 70 • written 22 months ago by ▴ 10
1
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1
reply
399
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heatmap with multi NA/0 value
RNA-Seq NA heatmap
updated 22 months ago by 44k • written 22 months ago by ▴ 10
1
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1
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459
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TPM TMM DESeq2 normalization which choose to draw the heatmap for all samples
RNA-Seq normalization heatmap
updated 23 months ago by 82k • written 23 months ago by ▴ 10
4
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3
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1.0k
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Number of gene for display in the complex heatmap
RNA-Seq complex heatmap
23 months ago by dew ▴ 10
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0
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1.0k
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Answer: Answer: Number of gene for display in the complex heatmap
23 months ago by dew ▴ 10
0
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0
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912
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Comment: Comment: protein ID convert to gene name ID
23 months ago by dew ▴ 10
5
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6
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912
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protein ID convert to gene name ID
proteomics
updated 10 months ago by 44k • written 23 months ago by ▴ 10
0
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0
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912
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Comment: Comment: protein ID convert to gene name ID
23 months ago by dew ▴ 10
0
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0
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9.9k
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Comment: Comment: Working with GTEX dataset
updated 17 months ago by 44k • written 2.0 years ago by ▴ 10
0
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0
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380
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C7 msigdb immune annotation results digging
annotation Misgdb RNA-Seq
2.0 years ago by dew ▴ 10
0
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0
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988
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Comment: Comment: DESeq2 after GSVA "some values in assay are negative"
2.0 years ago by dew ▴ 10
1
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2
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988
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DESeq2 after GSVA "some values in assay are negative"
GSVA DESeq2 RNA-seq
2.0 years ago by dew ▴ 10
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0
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750
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Comment: Comment: featureCounts results has many psedugenes(ENSG***) together with genes
2.1 years ago by dew ▴ 10
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1
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750
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Comment: Comment: featureCounts results has many psedugenes(ENSG***) together with genes
2.1 years ago by dew ▴ 10
3
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4
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750
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featureCounts results has many psedugenes(ENSG***) together with genes
featureCounts RNA-Seq
updated 2.1 years ago by 6.2k • written 2.1 years ago by ▴ 10
71 results • Page 1 of 2
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