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1
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2
replies
747
views
3 questions about module membership vs gene significance
WGCNA
updated 10 weeks ago by ★ 27k • written 2.9 years ago by ▴ 100
17
votes
9
replies
11k
views
9 follow
correct way of analyzing cell proportions in singlecell data
scRNA-seq single-cell
updated 4 months ago by 43k • written 3.7 years ago by ▴ 100
0
votes
2
replies
600
views
featurecounts not working on mirbase annotation file
usegalaxy miRNA-seq
11 months ago by demoraesdiogo2017 ▴ 100
1
vote
2
replies
518
views
No counts in my RNA-seq data
sRNA e.coli
14 months ago by demoraesdiogo2017 ▴ 100
3
votes
2
replies
580
views
carp reads in my bacterial small RNome
rna-seq
updated 14 months ago by 6.4k • written 14 months ago by ▴ 100
3
votes
3
replies
758
views
mirbase does not have miRNA annotation of my species, what are the alternatives?
mirbase mirna-seq
15 months ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
375
views
maximum fastq file size in galaxy?
fastq rna-seq usegalaxy
15 months ago by demoraesdiogo2017 ▴ 100
1
vote
5
replies
781
views
more than one sample in the same fasta file
mirnaseq usegalaxy
15 months ago by demoraesdiogo2017 ▴ 100
3
votes
2
replies
915
views
Relative log expression normalization without negative values
rna-seq
updated 20 months ago by 82k • written 20 months ago by ▴ 100
2
votes
3
replies
1.6k
views
96% of reads aligned to the genome, but only 40% to the transcriptome?
rnaseq single-cell
updated 21 months ago by 82k • written 21 months ago by ▴ 100
0
votes
3
replies
720
views
0% adapter bases after demultiplexing 10x data and "undetermined" sample
10x BCLconvert illumina snrnaseq
updated 22 months ago by 141k • written 22 months ago by ▴ 100
4
votes
5
replies
1.6k
views
how to tell if data was log transformed
UPLC
updated 2.2 years ago by ★ 27k • written 2.2 years ago by ▴ 100
0
votes
0
replies
334
views
cytoescape enhancedgraphics image export bug
cytoescape enhancedgraphics
2.3 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
635
views
high resolution deconvolution problem
cibersort deconvolution rna-seq
2.9 years ago by demoraesdiogo2017 ▴ 100
2
votes
4
replies
819
views
whole tissue and RNA-seq: can I still study specific cell types?
WGCNA rnaseq
2.9 years ago by demoraesdiogo2017 ▴ 100
2
votes
2
replies
1.1k
views
WGCNA module network interpretation
network WGCNA
2.9 years ago by demoraesdiogo2017 ▴ 100
5
votes
9
replies
9.5k
views
6 follow
ANOVA for RNA-seq data?
anova RNA-Seq
updated 2.7 years ago by 8.7k • written 4.4 years ago by ▴ 100
1
vote
1
reply
772
views
gene expression x phenotype correlation
RNA-Seq
updated 3.1 years ago by ★ 7.1k • written 3.2 years ago by ▴ 100
1
vote
3
replies
727
views
two samples with 0% alignment
galaxy hisat2 RNA-Seq
3.2 years ago by demoraesdiogo2017 ▴ 100
2
votes
5
replies
609
views
anyway to save contaminated samples?
RNA-Seq
3.2 years ago by demoraesdiogo2017 ▴ 100
2
votes
2
replies
703
views
blasting unaligned reads on usegalaxy
usegalaxy RNA-Seq hisat2
3.2 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
523
views
over represented adapter in reverse but not in forward reads?
RNA-Seq
3.3 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
503
views
clusters with no enrichment?
RNA-Seq
3.3 years ago by demoraesdiogo2017 ▴ 100
0
votes
1
reply
812
views
Seurat merge differing number of rows
seurat
updated 3.4 years ago by 20 • written 3.4 years ago by ▴ 100
1
vote
6
replies
6.7k
views
subscript out of bounds in seurat expression matrix [SOLVED]
seurat
3.7 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
543
views
comparing ScRNA-seq data from two different studies: should batch effects be corrected with pooled cells or not?
ScRNA-seq
3.9 years ago by demoraesdiogo2017 ▴ 100
1
vote
1
reply
1.2k
views
GEO COVID-19 accession with no .mtx, .crb or .rds file?
scmRNA single cell covid-19
3.9 years ago by demoraesdiogo2017 ▴ 100
0
votes
0
replies
593
views
two questions about drugbank and proposing an update on a pathway
drugbank kegg pathway
updated 4.0 years ago by 43k • written 4.0 years ago by ▴ 100
0
votes
4
replies
696
views
selecting a transcript for in vivo validation
RNA-Seq gene
4.3 years ago by demoraesdiogo2017 ▴ 100
8
votes
12
replies
1.7k
views
correlating focal CNV values with RNA-seq expression
CNV RNA-seq
updated 4.5 years ago by ★ 16k • written 4.5 years ago by ▴ 100
1
vote
1
reply
929
views
RNAseq differential expression analysis with only a set of genes
gene set differential expression
updated 4.7 years ago by 82k • written 4.7 years ago by ▴ 100
7
votes
10
replies
1.7k
views
col as names [solved]
R
updated 13 months ago by 43k • written 5.1 years ago by ▴ 100
3
votes
2
replies
3.8k
views
TPM and TMM, which should I use for clustering?
tpm tmm clustering
updated 5.2 years ago by 8.2k • written 5.2 years ago by ▴ 100
0
votes
1
reply
1.8k
views
TMM to TPM conversion
TMM TPM
5.2 years ago by demoraesdiogo2017 ▴ 100
2
votes
7
replies
4.7k
views
does the multiple linear regression from glmnet generate a formula?
ridge multiple linear regression lasso glmnet
5.2 years ago by demoraesdiogo2017 ▴ 100
2
votes
1
reply
913
views
are my results what they are supposed to look like?
lasso linear regression glmnet
5.2 years ago by demoraesdiogo2017 ▴ 100
7
votes
7
replies
11k
views
giving a color to null values on heatmap2
heatmap null values nas
updated 5.6 years ago by 14k • written 5.6 years ago by ▴ 100
0
votes
3
replies
8.2k
views
adding PCA ellipses on ggplot2
gene RNA-Seq ggplot2 pca
5.6 years ago by demoraesdiogo2017 ▴ 100
0
votes
2
replies
3.0k
views
"methods.rdb' is corrupt" for every library I load
software error R
updated 5.9 years ago by 87k • written 5.9 years ago by ▴ 100
5
votes
4
replies
16k
views
glmnet package lasso error
glmnet lasso multilinear regression
6.2 years ago by demoraesdiogo2017 ▴ 100
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