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1
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560
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Fastest way to use pysam view in order to get the reads in different regions
pysam_view samtools pysam bam optimisation
updated 11 months ago by ▴ 570 • written 11 months ago by ▴ 30
0
votes
1
reply
423
views
Pysam and CRAM file
cram pysam samtools
updated 13 months ago by ▴ 760 • written 14 months ago by ▴ 30
0
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0
replies
464
views
Comment: Comment: Jellyfish databases overlap
15 months ago by MarVi ▴ 30
0
votes
2
replies
464
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Jellyfish databases overlap
Jellyfish
15 months ago by MarVi ▴ 30
0
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0
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355
views
Comment: C: Sequencing Information from BAM file
15 months ago by MarVi ▴ 30
2
votes
2
replies
355
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Sequencing Information from BAM file
RNA-Seq BAM alignment Library
15 months ago by MarVi ▴ 30
0
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1
reply
420
views
Quicker way to know if a SNV is involved in a mismatch alignment
python cPickle Dictionary mismatch alignment
updated 21 months ago by 13k • written 21 months ago by ▴ 30
0
votes
0
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745
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Comment: C: Preventing alignment to new Splice Junctions with STAR
21 months ago by MarVi ▴ 30
1
vote
3
replies
745
views
Preventing alignment to new Splice Junctions with STAR
alignment sequence STAR Splice-Junctions
updated 21 months ago by ★ 2.9k • written 21 months ago by ▴ 30
3
votes
3
replies
1.3k
views
Why STAR Aligner limits alignments to soft-masked regions (lowercase letters in reference genome)?
alignment soft-masked regions genome GSNAP
updated 21 months ago by 102k • written 23 months ago by ▴ 30
0
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0
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1.3k
views
Comment: C: Why STAR Aligner limits alignments to soft-masked regions (lowercase letters in
22 months ago by MarVi ▴ 30
0
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0
replies
853
views
Comment: C: Annotation Human genome transcripts, Transcript Support Level meaning
3.0 years ago by MarVi ▴ 30
1
vote
2
replies
853
views
Annotation Human genome transcripts, Transcript Support Level meaning
gene Annotation Transcripts ensembl
updated 3.0 years ago by 23k • written 3.0 years ago by ▴ 30
1
vote
5
replies
1.3k
views
Defining transcript direction from sequencing
sequencing RNA-Seq
updated 3.3 years ago by 20 • written 4.2 years ago by ▴ 30
0
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0
replies
1.2k
views
Comment: C: Cufflinks merge not report Transcripts?
3.6 years ago by MarVi ▴ 30
0
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2
replies
1.2k
views
Cufflinks merge not report Transcripts?
Cufflinks RNA-Seq
3.6 years ago by MarVi ▴ 30
0
votes
0
replies
1.3k
views
Comment: C: How to efficiently remove a list of reads according to their ID and mapped posit
4.0 years ago by MarVi ▴ 30
0
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1
reply
1.3k
views
Comment: C: How to efficiently remove a list of reads according to their ID and mapped posit
4.0 years ago by MarVi ▴ 30
0
votes
7
replies
1.3k
views
How to efficiently remove a list of reads according to their ID and mapped position from BAM file?
samtools bam RNA-Seq alignment
updated 4.0 years ago by 146k • written 4.0 years ago by ▴ 30
0
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0
replies
1.3k
views
Comment: C: How to efficiently remove a list of reads according to their ID and mapped posit
4.0 years ago by MarVi ▴ 30
4
votes
10
replies
2.6k
views
Problem with samtools view - retrieving reads mapped to a region
RNA-Seq sequence software error
updated 4.1 years ago by 46k • written 4.1 years ago by ▴ 30
0
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1
reply
2.6k
views
Comment: C: Problem with Samview - retrieving reads mapped to a region
4.1 years ago by MarVi ▴ 30
0
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2
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2.6k
views
Comment: C: Problem with Samview - retrieving reads mapped to a region
4.1 years ago by MarVi ▴ 30
0
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1
reply
2.6k
views
Comment: C: Problem with Samview - retrieving reads mapped to a region
4.1 years ago by MarVi ▴ 30
0
votes
1
reply
779
views
Transcript coverage considering exons
assembly RNA-Seq coverage
4.2 years ago by MarVi ▴ 30
0
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1
reply
5.6k
views
Comment: C: Export coverage Track from IGV
4.2 years ago by MarVi ▴ 30
0
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1
reply
5.6k
views
Comment: C: Export coverage Track from IGV
4.2 years ago by MarVi ▴ 30
0
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5
replies
5.6k
views
Export coverage Track from IGV
igv bedtools depth genomecov
4.2 years ago by MarVi ▴ 30
0
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0
replies
1.3k
views
Comment: C: Defining transcript direction from sequencing
4.2 years ago by MarVi ▴ 30
0
votes
1
reply
1.3k
views
Comment: C: Defining transcript direction from sequencing
4.2 years ago by MarVi ▴ 30
1
vote
0
replies
227k
views
Comment: C: How To Filter Mapped Reads With Samtools
4.2 years ago by MarVi ▴ 30
0
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0
replies
5.5k
views
Comment: C: Understanding MAPping Quality in SAM file / Star
4.2 years ago by MarVi ▴ 30
0
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0
replies
5.5k
views
Comment: C: Understanding MAPping Quality in SAM file / Star
4.2 years ago by MarVi ▴ 30
0
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2
replies
5.5k
views
Comment: C: Understanding MAPping Quality in SAM file / Star
4.2 years ago by MarVi ▴ 30
6
votes
6
replies
5.5k
views
Understanding MAPping Quality in SAM file / Star
RNA-Seq alignment
updated 4.2 years ago by 93k • written 4.2 years ago by ▴ 30
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