Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
1
reply
1.7k
views
Fastest way to use pysam view in order to get the reads in different regions
pysam_view samtools pysam bam optimisation
updated 4.2 years ago by ▴ 580 • written 4.2 years ago by ▴ 30
0
votes
1
reply
1.3k
views
Pysam and CRAM file
cram pysam samtools
updated 4.4 years ago by ★ 1.3k • written 4.4 years ago by ▴ 30
0
votes
0
replies
1.0k
views
Comment: Comment: Jellyfish databases overlap
4.5 years ago by MarVi ▴ 30
0
votes
2
replies
1.0k
views
Jellyfish databases overlap
Jellyfish
4.5 years ago by MarVi ▴ 30
0
votes
0
replies
961
views
Comment: C: Sequencing Information from BAM file
4.5 years ago by MarVi ▴ 30
2
votes
2
replies
961
views
Sequencing Information from BAM file
RNA-Seq BAM alignment Library
4.5 years ago by MarVi ▴ 30
0
votes
1
reply
1.1k
views
Quicker way to know if a SNV is involved in a mismatch alignment
python cPickle Dictionary mismatch alignment
updated 5.0 years ago by 13k • written 5.0 years ago by ▴ 30
0
votes
0
replies
2.5k
views
Comment: C: Preventing alignment to new Splice Junctions with STAR
5.0 years ago by MarVi ▴ 30
2
votes
3
replies
2.5k
views
Preventing alignment to new Splice Junctions with STAR
alignment sequence STAR Splice-Junctions
updated 5.0 years ago by 4.2k • written 5.0 years ago by ▴ 30
3
votes
3
replies
3.3k
views
Why STAR Aligner limits alignments to soft-masked regions (lowercase letters in reference genome)?
alignment soft-masked regions genome GSNAP
updated 5.0 years ago by 105k • written 5.1 years ago by ▴ 30
0
votes
0
replies
3.3k
views
Comment: C: Why STAR Aligner limits alignments to soft-masked regions (lowercase letters in
5.1 years ago by MarVi ▴ 30
0
votes
0
replies
1.8k
views
Comment: C: Annotation Human genome transcripts, Transcript Support Level meaning
6.2 years ago by MarVi ▴ 30
1
vote
2
replies
1.8k
views
Annotation Human genome transcripts, Transcript Support Level meaning
gene Annotation Transcripts ensembl
updated 6.2 years ago by 24k • written 6.2 years ago by ▴ 30
1
vote
5
replies
2.4k
views
Defining transcript direction from sequencing
sequencing RNA-Seq
updated 6.6 years ago by 20 • written 7.5 years ago by ▴ 30
0
votes
0
replies
2.0k
views
Comment: C: Cufflinks merge not report Transcripts?
6.8 years ago by MarVi ▴ 30
0
votes
2
replies
2.0k
views
Cufflinks merge not report Transcripts?
Cufflinks RNA-Seq
6.8 years ago by MarVi ▴ 30
0
votes
0
replies
2.7k
views
Comment: C: How to efficiently remove a list of reads according to their ID and mapped posit
7.2 years ago by MarVi ▴ 30
0
votes
1
reply
2.7k
views
Comment: C: How to efficiently remove a list of reads according to their ID and mapped posit
7.2 years ago by MarVi ▴ 30
0
votes
7
replies
2.7k
views
How to efficiently remove a list of reads according to their ID and mapped position from BAM file?
samtools bam RNA-Seq alignment
updated 7.2 years ago by 166k • written 7.3 years ago by ▴ 30
0
votes
0
replies
2.7k
views
Comment: C: How to efficiently remove a list of reads according to their ID and mapped posit
7.2 years ago by MarVi ▴ 30
4
votes
10
replies
4.6k
views
Problem with samtools view - retrieving reads mapped to a region
RNA-Seq sequence software error
updated 7.3 years ago by 48k • written 7.3 years ago by ▴ 30
0
votes
1
reply
4.6k
views
Comment: C: Problem with Samview - retrieving reads mapped to a region
7.3 years ago by MarVi ▴ 30
0
votes
2
replies
4.6k
views
Comment: C: Problem with Samview - retrieving reads mapped to a region
7.3 years ago by MarVi ▴ 30
0
votes
1
reply
4.6k
views
Comment: C: Problem with Samview - retrieving reads mapped to a region
7.3 years ago by MarVi ▴ 30
0
votes
1
reply
1.3k
views
Transcript coverage considering exons
assembly RNA-Seq coverage
7.4 years ago by MarVi ▴ 30
0
votes
1
reply
9.0k
views
Comment: C: Export coverage Track from IGV
7.4 years ago by MarVi ▴ 30
0
votes
1
reply
9.0k
views
Comment: C: Export coverage Track from IGV
7.4 years ago by MarVi ▴ 30
0
votes
5
replies
9.0k
views
Export coverage Track from IGV
igv bedtools depth genomecov
7.4 years ago by MarVi ▴ 30
0
votes
0
replies
2.4k
views
Comment: C: Defining transcript direction from sequencing
7.4 years ago by MarVi ▴ 30
0
votes
1
reply
2.4k
views
Comment: C: Defining transcript direction from sequencing
7.5 years ago by MarVi ▴ 30
1
vote
0
replies
312k
views
Comment: C: How To Filter Mapped Reads With Samtools
7.5 years ago by MarVi ▴ 30
0
votes
0
replies
9.7k
views
Comment: C: Understanding MAPping Quality in SAM file / Star
7.5 years ago by MarVi ▴ 30
0
votes
0
replies
9.7k
views
Comment: C: Understanding MAPping Quality in SAM file / Star
7.5 years ago by MarVi ▴ 30
0
votes
2
replies
9.7k
views
Comment: C: Understanding MAPping Quality in SAM file / Star
7.5 years ago by MarVi ▴ 30
6
votes
6
replies
9.7k
views
Understanding MAPping Quality in SAM file / Star
RNA-Seq alignment
updated 7.5 years ago by 103k • written 7.5 years ago by ▴ 30
35 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6