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Comment: Comment: how to get methylated fragments (CpG regions) for only ONE sample using DMAP
3.7 years ago by iraia.munoa ▴ 130
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2.0k
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Comment: Comment: DMAP for RRBS generate blank output
3.7 years ago by iraia.munoa ▴ 130
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2
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3.6k
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From Bismark to methylkit, which file is better to use?
Bisulfite sequencing Bismark methylkit
updated 12 months ago by ★ 1.2k • written 4.8 years ago by ▴ 130
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1.2k
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Comment: Comment: How to change CpG methylation cutoffs in edgeR
4.2 years ago by iraia.munoa ▴ 130
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0
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858
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Comparison of Bisulfite sequencing results with Methylkit and edgeR
edgeR sequencing Bisulfite methylkit
4.3 years ago by iraia.munoa ▴ 130
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1.3k
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Comment: C: Problems with readBismark2DGE when uploading data
4.7 years ago by iraia.munoa ▴ 130
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1.3k
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Comment: C: Problems with readBismark2DGE when uploading data
4.7 years ago by iraia.munoa ▴ 130
1
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4
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1.3k
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Problems with readBismark2DGE when uploading data
edgeR Bisulfite sequencing
4.7 years ago by iraia.munoa ▴ 130
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0
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12k
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Answer: A: HISAT2 indexes, GRCm38 or mm10?
5.4 years ago by iraia.munoa ▴ 130
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1
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4.2k
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Comment: A: Bisulfite Analysis With Illumina Fastq From Different Lanes
5.4 years ago by iraia.munoa ▴ 130
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2.7k
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Comment: C: CPM plot for individual genes
6.4 years ago by iraia.munoa ▴ 130
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1
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2.7k
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Comment: C: CPM plot for individual genes
updated 6.4 years ago by 89k • written 6.4 years ago by ▴ 130
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0
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41k
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Comment: C: output TMM normalized counts with edgeR
6.4 years ago by iraia.munoa ▴ 130
2
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4
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2.7k
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CPM plot for individual genes
RNA-Seq CPM edgeR TMM
updated 6.4 years ago by 89k • written 6.4 years ago by ▴ 130
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0
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904
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Association database between repetitive elements and ncRNAs
Repetitive elements ncRNAs lncRNAS miRNAs
6.5 years ago by iraia.munoa ▴ 130
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1
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3.6k
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Comment: A: Oligo: GeneChip miRNA 4.0 analysis only returns control probes
6.5 years ago by iraia.munoa ▴ 130
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1
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3.2k
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Comment: C: Problems with the reference genome in Stringtie
6.6 years ago by iraia.munoa ▴ 130
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1
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3.2k
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Comment: C: Problems with the reference genome in Stringtie
6.6 years ago by iraia.munoa ▴ 130
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5
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3.2k
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Problems with the reference genome in Stringtie
Stringtie RNA-Seq lncRNA Reference Genome
updated 6.6 years ago by 105k • written 6.6 years ago by ▴ 130
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0
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2.2k
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Comment: C: Not clustered terms in david ontology functional annotation clustering
6.6 years ago by iraia.munoa ▴ 130
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2
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2.2k
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Not clustered terms in david ontology functional annotation clustering
david ontology functional annotation clustering
updated 6.6 years ago by 89k • written 6.6 years ago by ▴ 130
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0
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3.3k
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Read coverage normalization
RNAseq bamCoverage read coverage normalization
6.7 years ago by iraia.munoa ▴ 130
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1
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13k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
6.7 years ago by iraia.munoa ▴ 130
23
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23
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13k
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6 follow
How to see if adjusting batch effect in RNA-seq is working or not
RNA-Seq removeBatchEffect batch-effect edger
updated 17 months ago by 45k • written 6.7 years ago by ▴ 130
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0
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13k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
6.7 years ago by iraia.munoa ▴ 130
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0
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13k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
6.7 years ago by iraia.munoa ▴ 130
0
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1
reply
13k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
6.7 years ago by iraia.munoa ▴ 130
0
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0
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13k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
6.7 years ago by iraia.munoa ▴ 130
0
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1
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13k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
6.7 years ago by iraia.munoa ▴ 130
0
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1
reply
13k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
6.7 years ago by iraia.munoa ▴ 130
0
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0
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13k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
6.7 years ago by iraia.munoa ▴ 130
0
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0
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13k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
6.7 years ago by iraia.munoa ▴ 130
0
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1
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13k
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Comment: C: How to see if adjusting batch effect in RNA-seq is working or not
6.7 years ago by iraia.munoa ▴ 130
0
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0
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1.8k
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FEELnc and how to work with the results
FEELnc RNA-Seq lncRNA
6.8 years ago by iraia.munoa ▴ 130
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0
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2.6k
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Different options tryed with DiffBind and did not know what final result believe
ChIP-Seq DiffBind R edgeR DESeq2
6.8 years ago by iraia.munoa ▴ 130
2
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1
reply
1.7k
views
RNA-seq samples along different time points, how to run Stringtie?
RNA-Seq time-point stringtie
updated 7.0 years ago by ★ 2.6k • written 7.0 years ago by ▴ 130
0
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1
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3.3k
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Different results when visualizing tdf files in IGV and when doing the differential expression analysis with ballgown
RNA-Seq Assembly IGV Ballgown
updated 7.0 years ago by 45k • written 7.0 years ago by ▴ 130
0
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0
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112k
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Comment: Comment: Number of mapped reads from BAM file
updated 3.2 years ago by 45k • written 7.1 years ago by ▴ 130
38 results • Page 1 of 1
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