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From Bismark to methylkit, which file is better to use?
Bisulfite sequencing Bismark methylkit
updated 2.1 years ago by ▴ 510 • written 2.8 years ago by ▴ 130
1
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0
replies
494
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Comparison of Bisulfite sequencing results with Methylkit and edgeR
edgeR sequencing Bisulfite methylkit
2.3 years ago by iraia.munoa ▴ 130
1
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4
replies
591
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Problems with readBismark2DGE when uploading data
edgeR Bisulfite sequencing
2.7 years ago by iraia.munoa ▴ 130
2
votes
4
replies
1.9k
views
CPM plot for individual genes
RNA-Seq CPM edgeR TMM
updated 4.4 years ago by 77k • written 4.4 years ago by ▴ 130
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0
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591
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Association database between repetitive elements and ncRNAs
Repetitive elements ncRNAs lncRNAS miRNAs
4.5 years ago by iraia.munoa ▴ 130
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5
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2.2k
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Problems with the reference genome in Stringtie
Stringtie RNA-Seq lncRNA Reference Genome
updated 4.6 years ago by 103k • written 4.6 years ago by ▴ 130
2
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2
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1.4k
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Not clustered terms in david ontology functional annotation clustering
david ontology functional annotation clustering
updated 4.7 years ago by 86k • written 4.7 years ago by ▴ 130
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0
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2.8k
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Read coverage normalization
RNAseq bamCoverage read coverage normalization
4.7 years ago by iraia.munoa ▴ 130
23
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23
replies
8.7k
views
6 follow
How to see if adjusting batch effect in RNA-seq is working or not
batch effect edger removeBatchEffect RNA-Seq
updated 4.7 years ago by 8.2k • written 4.7 years ago by ▴ 130
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0
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1.4k
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FEELnc and how to work with the results
FEELnc RNA-Seq lncRNA
4.8 years ago by iraia.munoa ▴ 130
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0
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2.1k
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Different options tryed with DiffBind and did not know what final result believe
ChIP-Seq DiffBind R edgeR DESeq2
4.8 years ago by iraia.munoa ▴ 130
2
votes
1
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1.2k
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RNA-seq samples along different time points, how to run Stringtie?
RNA-Seq time-point stringtie
updated 5.0 years ago by ★ 2.5k • written 5.0 years ago by ▴ 130
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1
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2.6k
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Different results when visualizing tdf files in IGV and when doing the differential expression analysis with ballgown
RNA-Seq Assembly IGV Ballgown
updated 5.0 years ago by 40k • written 5.0 years ago by ▴ 130
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