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0
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2
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3.1k
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From Bismark to methylkit, which file is better to use?
Bisulfite sequencing Bismark methylkit
updated 6 months ago by ★ 1.2k • written 4.3 years ago by ▴ 130
1
vote
0
replies
762
views
Comparison of Bisulfite sequencing results with Methylkit and edgeR
edgeR sequencing Bisulfite methylkit
3.8 years ago by iraia.munoa ▴ 130
1
vote
4
replies
1.1k
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Problems with readBismark2DGE when uploading data
edgeR Bisulfite sequencing
4.2 years ago by iraia.munoa ▴ 130
2
votes
4
replies
2.5k
views
CPM plot for individual genes
RNA-Seq CPM edgeR TMM
updated 5.9 years ago by 87k • written 5.9 years ago by ▴ 130
0
votes
0
replies
816
views
Association database between repetitive elements and ncRNAs
Repetitive elements ncRNAs lncRNAS miRNAs
6.0 years ago by iraia.munoa ▴ 130
0
votes
5
replies
2.9k
views
Problems with the reference genome in Stringtie
Stringtie RNA-Seq lncRNA Reference Genome
updated 6.1 years ago by 105k • written 6.1 years ago by ▴ 130
2
votes
2
replies
2.0k
views
Not clustered terms in david ontology functional annotation clustering
david ontology functional annotation clustering
updated 6.1 years ago by 89k • written 6.2 years ago by ▴ 130
0
votes
0
replies
3.1k
views
Read coverage normalization
RNAseq bamCoverage read coverage normalization
6.2 years ago by iraia.munoa ▴ 130
23
votes
23
replies
12k
views
6 follow
How to see if adjusting batch effect in RNA-seq is working or not
RNA-Seq removeBatchEffect batch-effect edger
updated 11 months ago by 45k • written 6.2 years ago by ▴ 130
0
votes
0
replies
1.7k
views
FEELnc and how to work with the results
FEELnc RNA-Seq lncRNA
6.3 years ago by iraia.munoa ▴ 130
0
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0
replies
2.4k
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Different options tryed with DiffBind and did not know what final result believe
ChIP-Seq DiffBind R edgeR DESeq2
6.3 years ago by iraia.munoa ▴ 130
2
votes
1
reply
1.5k
views
RNA-seq samples along different time points, how to run Stringtie?
RNA-Seq time-point stringtie
updated 6.5 years ago by ★ 2.6k • written 6.5 years ago by ▴ 130
0
votes
1
reply
3.1k
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Different results when visualizing tdf files in IGV and when doing the differential expression analysis with ballgown
RNA-Seq Assembly IGV Ballgown
updated 6.5 years ago by 45k • written 6.5 years ago by ▴ 130
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