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Comment: Comment: Merging segment CNV files
3 months ago by avelarbio46 ▴ 30
0
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3
replies
698
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Merging segment CNV files
CNV
updated 3 months ago by 45k • written 3 months ago by ▴ 30
0
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0
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467
views
Consistent somatic CNV calling across samples: spurious, error or real?
MANTA CNVKit SV somatic CNV
updated 15 months ago by 154k • written 15 months ago by ▴ 30
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0
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700
views
Comment: Comment: Adding a simple tag to VCF Info column
17 months ago by avelarbio46 ▴ 30
0
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2
replies
700
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Adding a simple tag to VCF Info column
vcf
updated 17 months ago by 45k • written 17 months ago by ▴ 30
3
votes
1
reply
919
views
Intersection of multiple vcf files
isec vcf bcftools
updated 17 months ago by 23k • written 17 months ago by ▴ 30
0
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1
reply
2.6k
views
Comment: Comment: Filtering VCF based on codon-transcript
20 months ago by avelarbio46 ▴ 30
0
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1
reply
2.6k
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Comment: Comment: Filtering VCF based on codon-transcript
20 months ago by avelarbio46 ▴ 30
0
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1
reply
2.6k
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Comment: Comment: Filtering VCF based on codon-transcript
20 months ago by avelarbio46 ▴ 30
0
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0
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2.6k
views
Comment: Comment: Filtering VCF based on codon-transcript
20 months ago by avelarbio46 ▴ 30
0
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1
reply
2.6k
views
Comment: Comment: Filtering VCF based on codon-transcript
20 months ago by avelarbio46 ▴ 30
0
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11
replies
2.6k
views
Filtering VCF based on codon-transcript
vcf bcftools
updated 20 months ago by ★ 2.5k • written 20 months ago by ▴ 30
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0
replies
503
views
Calculate mean DP4 in a multisample vcf
dp4 vcf bcftools
updated 21 months ago by 45k • written 21 months ago by ▴ 30
0
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1
reply
20k
views
Comment: Comment: How to get sample names and genotype for SNP in multi-sample VCF file
2.1 years ago by avelarbio46 ▴ 30
0
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1
reply
20k
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Comment: Comment: How to get sample names and genotype for SNP in multi-sample VCF file
2.1 years ago by avelarbio46 ▴ 30
0
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1
reply
20k
views
Comment: Comment: How to get sample names and genotype for SNP in multi-sample VCF file
2.1 years ago by avelarbio46 ▴ 30
0
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0
replies
683
views
Adding custom annotation to VEP output VCF
bcftools VEP vcf
2.1 years ago by avelarbio46 ▴ 30
4
votes
4
replies
1.6k
views
Filtering VCF to divide with equal sizes
bcftools vcf
updated 2.1 years ago by 45k • written 2.1 years ago by ▴ 30
0
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1
reply
1.6k
views
Answer: Answer: Filtering VCF to divide with equal sizes
updated 2.1 years ago by 45k • written 2.1 years ago by ▴ 30
0
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0
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3.9k
views
Comment: Comment: Converting custom VCF to standard VCF
2.1 years ago by avelarbio46 ▴ 30
5
votes
12
replies
3.9k
views
Converting custom VCF to standard VCF
VCF
2.1 years ago by avelarbio46 ▴ 30
1
vote
4
replies
1.8k
views
Finding Unique values on specific INFO field of the VCF file (dbNSFP, vep annotated multisample VCF)
bcftools filter vep vcf
2.2 years ago by avelarbio46 ▴ 30
1
vote
0
replies
1.8k
views
Answer: Answer: Finding Unique values on specific INFO field of the VCF file (dbNSFP, vep annota
2.2 years ago by avelarbio46 ▴ 30
0
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0
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1.8k
views
Comment: Comment: Finding Unique values on specific INFO field of the VCF file
2.2 years ago by avelarbio46 ▴ 30
0
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1
reply
3.9k
views
Comment: Comment: Converting custom VCF to standard VCF
2.2 years ago by avelarbio46 ▴ 30
0
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1
reply
3.9k
views
Answer: Answer: Converting custom VCF to standard VCF
2.2 years ago by avelarbio46 ▴ 30
0
votes
1
reply
3.9k
views
Comment: Comment: Converting custom VCF to standard VCF
2.2 years ago by avelarbio46 ▴ 30
0
votes
0
replies
3.9k
views
Comment: Comment: Converting custom VCF to standard VCF
2.2 years ago by avelarbio46 ▴ 30
1
vote
3
replies
2.9k
views
Converting dbSNP VCF to work with RefSeq chromossome ID
NCBI dbSNP RefSeq
updated 2.3 years ago by ▴ 170 • written 2.7 years ago by ▴ 30
1
vote
1
reply
2.2k
views
Filtering VCF by specific tag in INFO field
bcftools vcf
updated 2.4 years ago by 45k • written 2.7 years ago by ▴ 30
5
votes
2
replies
2.8k
views
How to create a new gene signature from RNAseq data
gene RNAseq signature
updated 3.3 years ago by 90k • written 3.3 years ago by ▴ 30
0
votes
1
reply
1.2k
views
Filtering VCF variants based on txt file with variants CHROM, POS and ID
VCF
updated 3.5 years ago by 45k • written 3.5 years ago by ▴ 30
0
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1
reply
1.3k
views
Running STAR-SEQR with star outputs
STAR-SEQR STAR fusion RNAseq
updated 4.2 years ago by 154k • written 4.2 years ago by ▴ 30
0
votes
1
reply
1.1k
views
GSEA and over-representation analysis of many genes
GSEA DE ORA RNAseq
updated 3.9 years ago by ▴ 20 • written 4.2 years ago by ▴ 30
1
vote
1
reply
1.4k
views
How can I compare the similarities of two transcriptomes?
transcriptome similarity rnaseq
updated 4.4 years ago by ★ 1.1k • written 4.4 years ago by ▴ 30
0
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0
replies
2.8k
views
Comment: Comment: Can't count features with featurecount
4.5 years ago by avelarbio46 ▴ 30
0
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1
reply
2.8k
views
Comment: Comment: Can't count features with featurecount
4.6 years ago by avelarbio46 ▴ 30
0
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1
reply
2.8k
views
Comment: Comment: Can't count features with featurecount
4.6 years ago by avelarbio46 ▴ 30
2
votes
6
replies
2.8k
views
Can't count features with featurecount
RNAseq featurecounts
4.5 years ago by avelarbio46 ▴ 30
0
votes
0
replies
4.9k
views
Comment: Comment: Bash loop for bbduk
4.6 years ago by avelarbio46 ▴ 30
9
votes
11
replies
4.9k
views
Bash loop for bbduk
bash bbduk
updated 4.6 years ago by 21k • written 4.6 years ago by ▴ 30
0
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0
replies
4.9k
views
Answer: Answer: Bash loop for bbduk
4.6 years ago by avelarbio46 ▴ 30
0
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2
replies
4.9k
views
Comment: Comment: Bash loop for bbduk
4.6 years ago by avelarbio46 ▴ 30
0
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0
replies
4.9k
views
Comment: Comment: Bash loop for bbduk
4.6 years ago by avelarbio46 ▴ 30
0
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0
replies
4.9k
views
Comment: Comment: Bash loop for bbduk
4.6 years ago by avelarbio46 ▴ 30
0
votes
1
reply
1.9k
views
Comment: C: Removing batch effects
4.7 years ago by avelarbio46 ▴ 30
0
votes
3
replies
1.9k
views
Removing batch effects
batch-effect RNA-Seq
updated 4.7 years ago by 15k • written 4.7 years ago by ▴ 30
0
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0
replies
2.0k
views
Comment: C: STAR-fusion on galaxy
4.8 years ago by avelarbio46 ▴ 30
0
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1
reply
2.0k
views
Comment: C: STAR-fusion on galaxy
4.8 years ago by avelarbio46 ▴ 30
0
votes
4
replies
2.0k
views
STAR-fusion on galaxy
Galaxy RNA-Seq STAR-fusion
4.8 years ago by avelarbio46 ▴ 30
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