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Consistent somatic CNV calling across samples: spurious, error or real?
MANTA CNVKit SV somatic CNV
updated 24 days ago by 145k • written 24 days ago by ▴ 30
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317
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Comment: Comment: Adding a simple tag to VCF Info column
11 weeks ago by avelarbio46 ▴ 30
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2
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317
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Adding a simple tag to VCF Info column
vcf
updated 11 weeks ago by 44k • written 11 weeks ago by ▴ 30
3
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1
reply
266
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Intersection of multiple vcf files
isec vcf bcftools
updated 3 months ago by 22k • written 3 months ago by ▴ 30
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1
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1.1k
views
Comment: Comment: Filtering VCF based on codon-transcript
5 months ago by avelarbio46 ▴ 30
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1
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1.1k
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Comment: Comment: Filtering VCF based on codon-transcript
5 months ago by avelarbio46 ▴ 30
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1
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1.1k
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Comment: Comment: Filtering VCF based on codon-transcript
5 months ago by avelarbio46 ▴ 30
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0
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1.1k
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Comment: Comment: Filtering VCF based on codon-transcript
5 months ago by avelarbio46 ▴ 30
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1
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1.1k
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Comment: Comment: Filtering VCF based on codon-transcript
5 months ago by avelarbio46 ▴ 30
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11
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1.1k
views
Filtering VCF based on codon-transcript
vcf bcftools
updated 5 months ago by ★ 2.3k • written 5 months ago by ▴ 30
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0
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268
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Calculate mean DP4 in a multisample vcf
dp4 vcf bcftools
updated 7 months ago by 44k • written 7 months ago by ▴ 30
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1
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16k
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Comment: Comment: How to get sample names and genotype for SNP in multi-sample VCF file
11 months ago by avelarbio46 ▴ 30
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1
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16k
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Comment: Comment: How to get sample names and genotype for SNP in multi-sample VCF file
11 months ago by avelarbio46 ▴ 30
0
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1
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16k
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Comment: Comment: How to get sample names and genotype for SNP in multi-sample VCF file
11 months ago by avelarbio46 ▴ 30
0
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0
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369
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Adding custom annotation to VEP output VCF
bcftools VEP vcf
11 months ago by avelarbio46 ▴ 30
4
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4
replies
785
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Filtering VCF to divide with equal sizes
bcftools vcf
updated 11 months ago by 44k • written 11 months ago by ▴ 30
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1
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785
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Answer: Answer: Filtering VCF to divide with equal sizes
updated 11 months ago by 44k • written 11 months ago by ▴ 30
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0
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2.0k
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Comment: Comment: Converting custom VCF to standard VCF
11 months ago by avelarbio46 ▴ 30
5
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12
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2.0k
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Converting custom VCF to standard VCF
VCF
11 months ago by avelarbio46 ▴ 30
1
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4
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950
views
Finding Unique values on specific INFO field of the VCF file (dbNSFP, vep annotated multisample VCF)
bcftools filter vep vcf
11 months ago by avelarbio46 ▴ 30
1
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0
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950
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Answer: Answer: Finding Unique values on specific INFO field of the VCF file (dbNSFP, vep annota
11 months ago by avelarbio46 ▴ 30
0
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0
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950
views
Comment: Comment: Finding Unique values on specific INFO field of the VCF file
11 months ago by avelarbio46 ▴ 30
0
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1
reply
2.0k
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Comment: Comment: Converting custom VCF to standard VCF
11 months ago by avelarbio46 ▴ 30
0
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1
reply
2.0k
views
Answer: Answer: Converting custom VCF to standard VCF
11 months ago by avelarbio46 ▴ 30
0
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1
reply
2.0k
views
Comment: Comment: Converting custom VCF to standard VCF
12 months ago by avelarbio46 ▴ 30
0
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0
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2.0k
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Comment: Comment: Converting custom VCF to standard VCF
12 months ago by avelarbio46 ▴ 30
1
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3
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1.5k
views
Converting dbSNP VCF to work with RefSeq chromossome ID
NCBI dbSNP RefSeq
updated 13 months ago by ▴ 170 • written 18 months ago by ▴ 30
1
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1
reply
1.0k
views
Filtering VCF by specific tag in INFO field
bcftools vcf
updated 14 months ago by 44k • written 17 months ago by ▴ 30
5
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2
replies
1.6k
views
How to create a new gene signature from RNAseq data
gene RNAseq signature
updated 2.1 years ago by 84k • written 2.1 years ago by ▴ 30
0
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1
reply
795
views
Filtering VCF variants based on txt file with variants CHROM, POS and ID
VCF
updated 2.3 years ago by 44k • written 2.3 years ago by ▴ 30
0
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1
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946
views
Running STAR-SEQR with star outputs
STAR-SEQR STAR fusion RNAseq
updated 3.0 years ago by 145k • written 3.0 years ago by ▴ 30
0
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1
reply
815
views
GSEA and over-representation analysis of many genes
GSEA DE ORA RNAseq
updated 2.7 years ago by ▴ 10 • written 3.1 years ago by ▴ 30
1
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1
reply
1.0k
views
How can I compare the similarities of two transcriptomes?
transcriptome similarity rnaseq
updated 3.2 years ago by ★ 1.0k • written 3.2 years ago by ▴ 30
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0
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2.1k
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Comment: Comment: Can't count features with featurecount
3.3 years ago by avelarbio46 ▴ 30
0
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1
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2.1k
views
Comment: Comment: Can't count features with featurecount
3.4 years ago by avelarbio46 ▴ 30
0
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1
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2.1k
views
Comment: Comment: Can't count features with featurecount
3.4 years ago by avelarbio46 ▴ 30
2
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6
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2.1k
views
Can't count features with featurecount
RNAseq featurecounts
3.3 years ago by avelarbio46 ▴ 30
0
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0
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3.7k
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Comment: Comment: Bash loop for bbduk
3.4 years ago by avelarbio46 ▴ 30
9
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11
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3.7k
views
Bash loop for bbduk
bash bbduk
updated 3.4 years ago by 21k • written 3.4 years ago by ▴ 30
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0
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3.7k
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Answer: Answer: Bash loop for bbduk
3.4 years ago by avelarbio46 ▴ 30
0
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2
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3.7k
views
Comment: Comment: Bash loop for bbduk
3.4 years ago by avelarbio46 ▴ 30
0
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0
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3.7k
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Comment: Comment: Bash loop for bbduk
3.4 years ago by avelarbio46 ▴ 30
0
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0
replies
3.7k
views
Comment: Comment: Bash loop for bbduk
3.4 years ago by avelarbio46 ▴ 30
0
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1
reply
1.2k
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Comment: C: Removing batch effects
3.5 years ago by avelarbio46 ▴ 30
0
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3
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1.2k
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Removing batch effects
batch-effect RNA-Seq
updated 3.5 years ago by 14k • written 3.5 years ago by ▴ 30
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0
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1.5k
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Comment: C: STAR-fusion on galaxy
3.6 years ago by avelarbio46 ▴ 30
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1
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1.5k
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Comment: C: STAR-fusion on galaxy
3.6 years ago by avelarbio46 ▴ 30
0
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4
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1.5k
views
STAR-fusion on galaxy
Galaxy RNA-Seq STAR-fusion
3.6 years ago by avelarbio46 ▴ 30
0
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1
reply
23k
views
Comment: C: GO analysis using topGO
3.6 years ago by avelarbio46 ▴ 30
2
votes
1
reply
710
views
Gene size correction for small RNA
small RNA miRNA RNA-Seq normalization
updated 3.6 years ago by ★ 6.8k • written 3.6 years ago by ▴ 30
68 results • Page 1 of 2
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