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0
votes
0
replies
189
views
Consistent somatic CNV calling across samples: spurious, error or real?
MANTA
CNVKit
SV
somatic
CNV
updated 3 months ago by
GenoMax
147k • written 3 months ago by
avelarbio46
▴ 30
0
votes
0
replies
360
views
Comment:
Comment: Adding a simple tag to VCF Info column
5 months ago by
avelarbio46
▴ 30
0
votes
2
replies
360
views
Adding a simple tag to VCF Info column
vcf
updated 5 months ago by
Ram
44k • written 5 months ago by
avelarbio46
▴ 30
3
votes
1
reply
322
views
Intersection of multiple vcf files
isec
vcf
bcftools
updated 5 months ago by
Jeremy Leipzig
22k • written 5 months ago by
avelarbio46
▴ 30
0
votes
1
reply
1.3k
views
Comment:
Comment: Filtering VCF based on codon-transcript
7 months ago by
avelarbio46
▴ 30
0
votes
1
reply
1.3k
views
Comment:
Comment: Filtering VCF based on codon-transcript
8 months ago by
avelarbio46
▴ 30
0
votes
1
reply
1.3k
views
Comment:
Comment: Filtering VCF based on codon-transcript
8 months ago by
avelarbio46
▴ 30
0
votes
0
replies
1.3k
views
Comment:
Comment: Filtering VCF based on codon-transcript
8 months ago by
avelarbio46
▴ 30
0
votes
1
reply
1.3k
views
Comment:
Comment: Filtering VCF based on codon-transcript
8 months ago by
avelarbio46
▴ 30
0
votes
11
replies
1.3k
views
Filtering VCF based on codon-transcript
vcf
bcftools
updated 7 months ago by
barslmn
★ 2.3k • written 8 months ago by
avelarbio46
▴ 30
0
votes
0
replies
292
views
Calculate mean DP4 in a multisample vcf
dp4
vcf
bcftools
updated 9 months ago by
Ram
44k • written 9 months ago by
avelarbio46
▴ 30
0
votes
1
reply
16k
views
Comment:
Comment: How to get sample names and genotype for SNP in multi-sample VCF file
13 months ago by
avelarbio46
▴ 30
0
votes
1
reply
16k
views
Comment:
Comment: How to get sample names and genotype for SNP in multi-sample VCF file
13 months ago by
avelarbio46
▴ 30
0
votes
1
reply
16k
views
Comment:
Comment: How to get sample names and genotype for SNP in multi-sample VCF file
13 months ago by
avelarbio46
▴ 30
0
votes
0
replies
391
views
Adding custom annotation to VEP output VCF
bcftools
VEP
vcf
13 months ago by
avelarbio46
▴ 30
4
votes
4
replies
864
views
Filtering VCF to divide with equal sizes
bcftools
vcf
updated 13 months ago by
Ram
44k • written 13 months ago by
avelarbio46
▴ 30
0
votes
1
reply
864
views
Answer:
Answer: Filtering VCF to divide with equal sizes
updated 13 months ago by
Ram
44k • written 13 months ago by
avelarbio46
▴ 30
0
votes
0
replies
2.3k
views
Comment:
Comment: Converting custom VCF to standard VCF
14 months ago by
avelarbio46
▴ 30
5
votes
12
replies
2.3k
views
Converting custom VCF to standard VCF
VCF
14 months ago by
avelarbio46
▴ 30
1
vote
4
replies
1.1k
views
Finding Unique values on specific INFO field of the VCF file (dbNSFP, vep annotated multisample VCF)
bcftools
filter
vep
vcf
14 months ago by
avelarbio46
▴ 30
1
vote
0
replies
1.1k
views
Answer:
Answer: Finding Unique values on specific INFO field of the VCF file (dbNSFP, vep annota
14 months ago by
avelarbio46
▴ 30
0
votes
0
replies
1.1k
views
Comment:
Comment: Finding Unique values on specific INFO field of the VCF file
14 months ago by
avelarbio46
▴ 30
0
votes
1
reply
2.3k
views
Comment:
Comment: Converting custom VCF to standard VCF
14 months ago by
avelarbio46
▴ 30
0
votes
1
reply
2.3k
views
Answer:
Answer: Converting custom VCF to standard VCF
14 months ago by
avelarbio46
▴ 30
0
votes
1
reply
2.3k
views
Comment:
Comment: Converting custom VCF to standard VCF
14 months ago by
avelarbio46
▴ 30
0
votes
0
replies
2.3k
views
Comment:
Comment: Converting custom VCF to standard VCF
14 months ago by
avelarbio46
▴ 30
1
vote
3
replies
1.7k
views
Converting dbSNP VCF to work with RefSeq chromossome ID
NCBI
dbSNP
RefSeq
updated 15 months ago by
onter
▴ 170 • written 20 months ago by
avelarbio46
▴ 30
1
vote
1
reply
1.1k
views
Filtering VCF by specific tag in INFO field
bcftools
vcf
updated 16 months ago by
Ram
44k • written 20 months ago by
avelarbio46
▴ 30
5
votes
2
replies
1.8k
views
How to create a new gene signature from RNAseq data
gene
RNAseq
signature
updated 2.3 years ago by
ATpoint
85k • written 2.3 years ago by
avelarbio46
▴ 30
0
votes
1
reply
839
views
Filtering VCF variants based on txt file with variants CHROM, POS and ID
VCF
updated 2.5 years ago by
Ram
44k • written 2.5 years ago by
avelarbio46
▴ 30
0
votes
1
reply
984
views
Running STAR-SEQR with star outputs
STAR-SEQR
STAR
fusion
RNAseq
updated 3.2 years ago by
GenoMax
147k • written 3.2 years ago by
avelarbio46
▴ 30
0
votes
1
reply
847
views
GSEA and over-representation analysis of many genes
GSEA
DE
ORA
RNAseq
updated 2.9 years ago by
bookorg
▴ 20 • written 3.2 years ago by
avelarbio46
▴ 30
1
vote
1
reply
1.1k
views
How can I compare the similarities of two transcriptomes?
transcriptome
similarity
rnaseq
updated 3.4 years ago by
Pratik
★ 1.1k • written 3.4 years ago by
avelarbio46
▴ 30
0
votes
0
replies
2.2k
views
Comment:
Comment: Can't count features with featurecount
3.5 years ago by
avelarbio46
▴ 30
0
votes
1
reply
2.2k
views
Comment:
Comment: Can't count features with featurecount
3.6 years ago by
avelarbio46
▴ 30
0
votes
1
reply
2.2k
views
Comment:
Comment: Can't count features with featurecount
3.6 years ago by
avelarbio46
▴ 30
2
votes
6
replies
2.2k
views
Can't count features with featurecount
RNAseq
featurecounts
3.5 years ago by
avelarbio46
▴ 30
0
votes
0
replies
3.8k
views
Comment:
Comment: Bash loop for bbduk
3.6 years ago by
avelarbio46
▴ 30
9
votes
11
replies
3.8k
views
Bash loop for bbduk
bash
bbduk
updated 3.6 years ago by
cpad0112
21k • written 3.6 years ago by
avelarbio46
▴ 30
0
votes
0
replies
3.8k
views
Answer:
Answer: Bash loop for bbduk
3.6 years ago by
avelarbio46
▴ 30
0
votes
2
replies
3.8k
views
Comment:
Comment: Bash loop for bbduk
3.6 years ago by
avelarbio46
▴ 30
0
votes
0
replies
3.8k
views
Comment:
Comment: Bash loop for bbduk
3.6 years ago by
avelarbio46
▴ 30
0
votes
0
replies
3.8k
views
Comment:
Comment: Bash loop for bbduk
3.6 years ago by
avelarbio46
▴ 30
0
votes
1
reply
1.3k
views
Comment:
C: Removing batch effects
3.7 years ago by
avelarbio46
▴ 30
0
votes
3
replies
1.3k
views
Removing batch effects
batch-effect
RNA-Seq
updated 3.7 years ago by
swbarnes2
14k • written 3.7 years ago by
avelarbio46
▴ 30
0
votes
0
replies
1.6k
views
Comment:
C: STAR-fusion on galaxy
3.8 years ago by
avelarbio46
▴ 30
0
votes
1
reply
1.6k
views
Comment:
C: STAR-fusion on galaxy
3.8 years ago by
avelarbio46
▴ 30
0
votes
4
replies
1.6k
views
STAR-fusion on galaxy
Galaxy
RNA-Seq
STAR-fusion
3.8 years ago by
avelarbio46
▴ 30
0
votes
1
reply
23k
views
Comment:
C: GO analysis using topGO
3.8 years ago by
avelarbio46
▴ 30
2
votes
1
reply
733
views
Gene size correction for small RNA
small RNA
miRNA
RNA-Seq
normalization
updated 3.8 years ago by
dsull
★ 6.9k • written 3.8 years ago by
avelarbio46
▴ 30
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