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8
votes
5
replies
6.4k
views
Genomic Bam To Transcriptome Bam
bam samtools
updated 11 months ago by ▴ 240 • written 9.3 years ago by ▴ 720
5
votes
3
replies
7.2k
views
Liftover Bam File
bam samtools liftover
updated 6.6 years ago by ★ 1.9k • written 9.5 years ago by ▴ 720
9
votes
8
replies
13k
views
Samtools Filter Reads Cigar Field
samtools cigar
updated 6.9 years ago by 20 • written 9.6 years ago by ▴ 720
2
votes
9
replies
5.6k
views
Splice-Aware Aligners Versus Genomic Aligners To Transcriptome
alignment
updated 8.9 years ago by 8.2k • written 9.3 years ago by ▴ 720
10
votes
7
replies
8.2k
views
Download Geo Sra Data Using Aspera Connect
ncbi geo
updated 8.9 years ago by ▴ 10 • written 10.1 years ago by ▴ 720
2
votes
0
replies
10k
views
Answer: A: The Easiest/Fastest Way To Get From Bam To Tpm Or Rpkm
9.1 years ago by dfernan ▴ 720
8
votes
4
replies
6.5k
views
Samtools View Of A Sam File Entire Chromosome
samtools
updated 9.1 years ago by 20 • written 9.5 years ago by ▴ 720
0
votes
0
replies
5.2k
views
Comment: C: Rna-Seq Paired End 76 Bp Read Data From Sra To Fastq To Bam
9.2 years ago by dfernan ▴ 720
1
vote
4
replies
5.2k
views
Rna-Seq Paired End 76 Bp Read Data From Sra To Fastq To Bam
sra bam fastq
updated 9.2 years ago by 12k • written 9.2 years ago by ▴ 720
0
votes
0
replies
5.2k
views
Comment: C: Rna-Seq Paired End 76 Bp Read Data From Sra To Fastq To Bam
9.2 years ago by dfernan ▴ 720
0
votes
1
reply
5.6k
views
Comment: C: Splice-Aware Aligners Versus Genomic Aligners To Transcriptome
9.3 years ago by dfernan ▴ 720
0
votes
1
reply
5.6k
views
Comment: C: Splice-Aware Aligners Versus Genomic Aligners To Transcriptome
9.3 years ago by dfernan ▴ 720
0
votes
0
replies
5.6k
views
Comment: C: Splice-Aware Aligners Versus Genomic Aligners To Transcriptome
9.3 years ago by dfernan ▴ 720
0
votes
0
replies
6.4k
views
Comment: C: Genomic Bam To Transcriptome Bam
9.3 years ago by dfernan ▴ 720
2
votes
0
replies
36k
views
Comment: C: Why Does Rna-Seq Read Count Fit Poisson Distribution?
9.4 years ago by dfernan ▴ 720
0
votes
0
replies
19k
views
Comment: C: Trim/Remove Reads With Adapters From Illumina Rna-Seq Experiment
9.4 years ago by dfernan ▴ 720
0
votes
0
replies
19k
views
Comment: C: Trim/Remove Reads With Adapters From Illumina Rna-Seq Experiment
9.4 years ago by dfernan ▴ 720
16
votes
7
replies
19k
views
Trim/Remove Reads With Adapters From Illumina Rna-Seq Experiment
rnaseq rna-seq rna fastqc fastq
updated 9.4 years ago by 97k • written 9.4 years ago by ▴ 720
0
votes
0
replies
5.0k
views
Comment: C: Ensembl And Ucsc Gtfs To Match
9.5 years ago by dfernan ▴ 720
2
votes
2
replies
5.0k
views
Ensembl And Ucsc Gtfs To Match
gtf ensembl ucsc
9.5 years ago by dfernan ▴ 720
0
votes
0
replies
7.2k
views
Comment: C: Liftover Bam File
9.5 years ago by dfernan ▴ 720
52
votes
22
replies
36k
views
Extract Only Uniquely Mappable Reads From Bam Files
bam samtools
updated 9.6 years ago by • 0 • written 10.3 years ago by ▴ 720
20
votes
8
replies
16k
views
6 follow
Download Geo Tar File Automatically From Linux/Unix
unix geo
updated 9.6 years ago by ▴ 440 • written 10.2 years ago by ▴ 720
0
votes
0
replies
13k
views
Comment: C: Samtools Filter Reads Cigar Field
9.6 years ago by dfernan ▴ 720
0
votes
0
replies
13k
views
Comment: C: Samtools Filter Reads Cigar Field
9.6 years ago by dfernan ▴ 720
0
votes
1
reply
13k
views
Comment: C: Samtools Filter Reads Cigar Field
9.6 years ago by dfernan ▴ 720
2
votes
2
replies
2.9k
views
Looking For Motif Finding Tools That Work On Broad Peaks
motif chip-seq
updated 9.6 years ago by ▴ 520 • written 10.4 years ago by ▴ 720
1
vote
0
replies
1.5k
views
Snp Density Across Species, And Model Organisms
snp
9.7 years ago by dfernan ▴ 720
3
votes
3
replies
2.5k
views
Python Check Correct Bam Or Correct Fastq Format
fastq bam python
updated 9.7 years ago by 20 • written 9.8 years ago by ▴ 720
0
votes
0
replies
4.4k
views
Comment: C: Known Snps For C57Bl/6 And Cast/Eij
9.9 years ago by dfernan ▴ 720
6
votes
5
replies
4.4k
views
Known Snps For C57Bl/6 And Cast/Eij
snp dbsnp
updated 9.9 years ago by 16k • written 9.9 years ago by ▴ 720
0
votes
1
reply
4.4k
views
Comment: C: Known Snps For C57Bl/6 And Cast/Eij
9.9 years ago by dfernan ▴ 720
0
votes
0
replies
12k
views
Comment: C: Samtools Count Paired-End Reads
9.9 years ago by dfernan ▴ 720
2
votes
4
replies
12k
views
Samtools Count Paired-End Reads
paired-end samtools tophat
9.9 years ago by dfernan ▴ 720
0
votes
0
replies
12k
views
Comment: C: Samtools Count Paired-End Reads
9.9 years ago by dfernan ▴ 720
0
votes
0
replies
5.7k
views
Comment: C: Bwa -N 1 -N Options, What They Mean?
9.9 years ago by dfernan ▴ 720
5
votes
5
replies
5.7k
views
Bwa -N 1 -N Options, What They Mean?
bwa
updated 10.0 years ago by 12k • written 10.0 years ago by ▴ 720
0
votes
0
replies
74k
views
Comment: C: Selecting Random Pairs From Fastq?
10.0 years ago by dfernan ▴ 720
0
votes
1
reply
74k
views
Comment: C: Selecting Random Pairs From Fastq?
10.0 years ago by dfernan ▴ 720
0
votes
0
replies
12k
views
Comment: C: Take A Subset Of A Fastq Paired-End Sample
10.0 years ago by dfernan ▴ 720
0
votes
0
replies
12k
views
Comment: C: Take A Subset Of A Fastq Paired-End Sample
10.0 years ago by dfernan ▴ 720
4
votes
4
replies
12k
views
Take A Subset Of A Fastq Paired-End Sample
fastq illumina paired-end reads rnaseq rna-seq
updated 10.0 years ago by ▴ 650 • written 10.0 years ago by ▴ 720
0
votes
0
replies
2.2k
views
Gtf/Gff File Of Repetitive Elements To Use With Tophat2
gtf tophat2
10.0 years ago by dfernan ▴ 720
21
votes
5
replies
3.8k
views
Where Were The Human Genome Reference Samples Taken From?
reference genome project
updated 10.1 years ago by 19k • written 10.1 years ago by ▴ 720
0
votes
0
replies
3.8k
views
Comment: C: Where Were The Human Genome Reference Samples Taken From?
10.1 years ago by dfernan ▴ 720
35
votes
5
replies
24k
views
What Does Cds And Exon Mean In A Gtf File?
gtf rna-seq
updated 10.1 years ago by 97k • written 10.1 years ago by ▴ 720
1
vote
0
replies
21k
views
Comment: C: Transforming And Manipulating Color Space Reads
10.1 years ago by dfernan ▴ 720
0
votes
0
replies
5.6k
views
Comment: C: How To Transform The Colorspace Data Obtained From Sra Into A Format Suitable Fo
10.1 years ago by dfernan ▴ 720
5
votes
6
replies
5.6k
views
How To Transform The Colorspace Data Obtained From Sra Into A Format Suitable For The Tophat Rna-Seq Pipeline?
tophat sra geo bowtie rna-seq
10.1 years ago by dfernan ▴ 720
1
vote
0
replies
5.6k
views
Comment: C: How To Transform The Colorspace Data Obtained From Sra Into A Format Suitable Fo
10.1 years ago by dfernan ▴ 720
82 results • Page 1 of 2
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