Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
4
votes
5
replies
15k
views
Take A Subset Of A Fastq Paired-End Sample
paired-end fastq rna-seq illumina
updated 2.4 years ago by 45k • written 12.6 years ago by ▴ 770
25
votes
9
replies
25k
views
8 follow
Download Geo Tar File Automatically From Linux/Unix
unix geo
updated 2.5 years ago by ▴ 20 • written 12.8 years ago by ▴ 770
9
votes
5
replies
9.3k
views
Genomic Bam To Transcriptome Bam
bam samtools
updated 2.1 years ago by 45k • written 11.9 years ago by ▴ 770
5
votes
3
replies
9.6k
views
Liftover Bam File
bam samtools liftover
updated 9.2 years ago by ★ 2.0k • written 12.1 years ago by ▴ 770
10
votes
8
replies
17k
views
Samtools Filter Reads Cigar Field
samtools cigar
updated 9.5 years ago by 20 • written 12.2 years ago by ▴ 770
2
votes
9
replies
7.4k
views
Splice-Aware Aligners Versus Genomic Aligners To Transcriptome
alignment
updated 11.5 years ago by 8.3k • written 11.9 years ago by ▴ 770
10
votes
7
replies
10k
views
Download Geo Sra Data Using Aspera Connect
ncbi geo
updated 11.5 years ago by ▴ 10 • written 12.7 years ago by ▴ 770
2
votes
0
replies
12k
views
Answer: A: The Easiest/Fastest Way To Get From Bam To Tpm Or Rpkm
11.7 years ago by dfernan ▴ 770
8
votes
4
replies
7.4k
views
Samtools View Of A Sam File Entire Chromosome
samtools
updated 11.7 years ago by 20 • written 12.1 years ago by ▴ 770
0
votes
0
replies
6.3k
views
Comment: C: Rna-Seq Paired End 76 Bp Read Data From Sra To Fastq To Bam
11.8 years ago by dfernan ▴ 770
1
vote
4
replies
6.3k
views
Rna-Seq Paired End 76 Bp Read Data From Sra To Fastq To Bam
sra bam fastq
updated 11.8 years ago by 12k • written 11.8 years ago by ▴ 770
0
votes
0
replies
6.3k
views
Comment: C: Rna-Seq Paired End 76 Bp Read Data From Sra To Fastq To Bam
11.8 years ago by dfernan ▴ 770
0
votes
1
reply
7.4k
views
Comment: C: Splice-Aware Aligners Versus Genomic Aligners To Transcriptome
11.9 years ago by dfernan ▴ 770
0
votes
1
reply
7.4k
views
Comment: C: Splice-Aware Aligners Versus Genomic Aligners To Transcriptome
11.9 years ago by dfernan ▴ 770
0
votes
0
replies
7.4k
views
Comment: C: Splice-Aware Aligners Versus Genomic Aligners To Transcriptome
11.9 years ago by dfernan ▴ 770
0
votes
0
replies
9.3k
views
Comment: C: Genomic Bam To Transcriptome Bam
11.9 years ago by dfernan ▴ 770
2
votes
0
replies
46k
views
Comment: C: Why Does Rna-Seq Read Count Fit Poisson Distribution?
12.0 years ago by dfernan ▴ 770
0
votes
0
replies
21k
views
Comment: C: Trim/Remove Reads With Adapters From Illumina Rna-Seq Experiment
12.0 years ago by dfernan ▴ 770
0
votes
0
replies
21k
views
Comment: C: Trim/Remove Reads With Adapters From Illumina Rna-Seq Experiment
12.0 years ago by dfernan ▴ 770
16
votes
7
replies
21k
views
Trim/Remove Reads With Adapters From Illumina Rna-Seq Experiment
rnaseq rna-seq rna fastqc fastq
updated 12.0 years ago by 103k • written 12.0 years ago by ▴ 770
0
votes
0
replies
5.9k
views
Comment: C: Ensembl And Ucsc Gtfs To Match
12.1 years ago by dfernan ▴ 770
5
votes
2
replies
5.9k
views
Ensembl And Ucsc Gtfs To Match
gtf ensembl ucsc
12.1 years ago by dfernan ▴ 770
0
votes
0
replies
9.6k
views
Comment: C: Liftover Bam File
12.1 years ago by dfernan ▴ 770
52
votes
22
replies
45k
views
Extract Only Uniquely Mappable Reads From Bam Files
bam samtools
updated 12.2 years ago by • 0 • written 12.9 years ago by ▴ 770
0
votes
0
replies
17k
views
Comment: C: Samtools Filter Reads Cigar Field
12.2 years ago by dfernan ▴ 770
0
votes
0
replies
17k
views
Comment: C: Samtools Filter Reads Cigar Field
12.2 years ago by dfernan ▴ 770
0
votes
1
reply
17k
views
Comment: C: Samtools Filter Reads Cigar Field
12.2 years ago by dfernan ▴ 770
2
votes
2
replies
3.7k
views
Looking For Motif Finding Tools That Work On Broad Peaks
motif chip-seq
updated 12.2 years ago by ▴ 520 • written 13.0 years ago by ▴ 770
1
vote
0
replies
1.9k
views
Snp Density Across Species, And Model Organisms
snp
12.3 years ago by dfernan ▴ 770
3
votes
3
replies
3.5k
views
Python Check Correct Bam Or Correct Fastq Format
fastq bam python
updated 12.3 years ago by 20 • written 12.4 years ago by ▴ 770
0
votes
0
replies
6.0k
views
Comment: C: Known Snps For C57Bl/6 And Cast/Eij
12.5 years ago by dfernan ▴ 770
6
votes
5
replies
6.0k
views
Known Snps For C57Bl/6 And Cast/Eij
snp dbsnp
updated 12.5 years ago by 16k • written 12.5 years ago by ▴ 770
0
votes
1
reply
6.0k
views
Comment: C: Known Snps For C57Bl/6 And Cast/Eij
12.5 years ago by dfernan ▴ 770
0
votes
0
replies
15k
views
Comment: C: Samtools Count Paired-End Reads
12.6 years ago by dfernan ▴ 770
2
votes
4
replies
15k
views
Samtools Count Paired-End Reads
paired-end samtools tophat
12.6 years ago by dfernan ▴ 770
0
votes
0
replies
15k
views
Comment: C: Samtools Count Paired-End Reads
12.6 years ago by dfernan ▴ 770
0
votes
0
replies
7.7k
views
Comment: C: Bwa -N 1 -N Options, What They Mean?
12.6 years ago by dfernan ▴ 770
5
votes
5
replies
7.7k
views
Bwa -N 1 -N Options, What They Mean?
bwa
updated 12.6 years ago by 12k • written 12.6 years ago by ▴ 770
0
votes
0
replies
104k
views
Comment: C: Selecting Random Pairs From Fastq?
12.6 years ago by dfernan ▴ 770
0
votes
1
reply
104k
views
Comment: C: Selecting Random Pairs From Fastq?
12.6 years ago by dfernan ▴ 770
0
votes
0
replies
15k
views
Comment: C: Take A Subset Of A Fastq Paired-End Sample
12.6 years ago by dfernan ▴ 770
0
votes
0
replies
15k
views
Comment: Comment: Take A Subset Of A Fastq Paired-End Sample
updated 2.4 years ago by 45k • written 12.6 years ago by ▴ 770
0
votes
0
replies
2.6k
views
Gtf/Gff File Of Repetitive Elements To Use With Tophat2
gtf tophat2
12.6 years ago by dfernan ▴ 770
21
votes
5
replies
5.2k
views
Where Were The Human Genome Reference Samples Taken From?
reference genome project
updated 12.7 years ago by 20k • written 12.7 years ago by ▴ 770
0
votes
0
replies
5.2k
views
Comment: C: Where Were The Human Genome Reference Samples Taken From?
12.7 years ago by dfernan ▴ 770
38
votes
5
replies
30k
views
What Does Cds And Exon Mean In A Gtf File?
gtf rna-seq
updated 12.7 years ago by 103k • written 12.7 years ago by ▴ 770
1
vote
0
replies
24k
views
Comment: C: Transforming And Manipulating Color Space Reads
12.7 years ago by dfernan ▴ 770
0
votes
0
replies
6.7k
views
Comment: C: How To Transform The Colorspace Data Obtained From Sra Into A Format Suitable Fo
12.7 years ago by dfernan ▴ 770
5
votes
6
replies
6.7k
views
How To Transform The Colorspace Data Obtained From Sra Into A Format Suitable For The Tophat Rna-Seq Pipeline?
tophat sra geo bowtie rna-seq
12.7 years ago by dfernan ▴ 770
1
vote
0
replies
6.7k
views
Comment: C: How To Transform The Colorspace Data Obtained From Sra Into A Format Suitable Fo
12.7 years ago by dfernan ▴ 770
82 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6