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questions
1
vote
5
replies
967
views
Using Bedtools coverage for a single alignment file?
Bedtools
19 months ago by
caro-ca
▴ 20
2
votes
8
replies
1.2k
views
Understanding Variant Effect Predictor results
ensembl
vep
variant effect predictor
3.3 years ago by
caro-ca
▴ 20
2
votes
3
replies
772
views
Does VEP use alternative splicing in their calculations?
VEP
Ensembl
Variant Effect Predictor
updated 3.3 years ago by
Emily
23k • written 3.3 years ago by
caro-ca
▴ 20
1
vote
3
replies
921
views
Is there a software that enables exploration of patterns and associations in heatmaps?
NG-CHM
heatmap
data visualization
updated 3.6 years ago by
Biostar
20 • written 3.6 years ago by
caro-ca
▴ 20
1
vote
12
replies
1.7k
views
Error while attempting to create a VennDiagram with bcftools stats
bcftools
sort
venndiagram
updated 3.6 years ago by
Biostar
20 • written 3.7 years ago by
caro-ca
▴ 20
2
votes
2
replies
784
views
Assembly convertor errors
Ensembl
Lift Genome Annotation
assembly convertor
3.7 years ago by
caro-ca
▴ 20
4
votes
14
replies
3.5k
views
How can I use my own genome file on Variant Effect Predictor (VEP)
VEP
ENSEMBL
VARIANT EFFECT PREDICTOR
updated 3.7 years ago by
Ben_Ensembl
★ 2.4k • written 3.7 years ago by
caro-ca
▴ 20
4
votes
9
replies
1.3k
views
Correct use of bash wildcards
bash
wildcards
updated 3.7 years ago by
Mensur Dlakic
★ 27k • written 3.7 years ago by
caro-ca
▴ 20
3
votes
9
replies
1.3k
views
Nest 2 for loops in a single command line
bash
for loops
updated 3.7 years ago by
2nelly
▴ 310 • written 3.7 years ago by
caro-ca
▴ 20
11
votes
13
replies
5.9k
views
6 follow
Rosalind exercise: Finding a Motif in DNA
python
rosalind
updated 13 months ago by
Ram
43k • written 3.8 years ago by
caro-ca
▴ 20
4
votes
9
replies
1.6k
views
Got an error while Translating a mRNA sequence into a protein
python
dictionary
3.8 years ago by
caro-ca
▴ 20
1
vote
7
replies
904
views
How can I uncompress specific files in a loop and use them in another code and compress them again?
python
4.1 years ago by
caro-ca
▴ 20
4
votes
9
replies
1.3k
views
Software testing process failure: How can I match the already installed programs with the testing data?
anaconda2
pybedtools
4.1 years ago by
caro-ca
▴ 20
3
votes
4
replies
1.3k
views
How to Bedtools intersect two different sorted BED files
bedtools
updated 4.2 years ago by
ATpoint
82k • written 4.2 years ago by
caro-ca
▴ 20
5
votes
6
replies
1.2k
views
How to assign keys and values in a directory by using python
dictionary
python
for loop
updated 4.3 years ago by
Brice Sarver
★ 3.8k • written 4.3 years ago by
caro-ca
▴ 20
1
vote
1
reply
870
views
Counting reads and bases from a list of fastq files
python
count_reads
count_bases
updated 4.4 years ago by
cpad0112
21k • written 4.4 years ago by
caro-ca
▴ 20
2
votes
2
replies
953
views
Bowtie2 perl:warning:Setting local failes
linux
bowtie2
updated 13 months ago by
Ram
43k • written 4.4 years ago by
caro-ca
▴ 20
4
votes
5
replies
1.6k
views
MUMmer alignments: Trying to understand the average identity result
MUMmer
de novo assembly
average identity
updated 4.5 years ago by
Istvan Albert
100k • written 4.5 years ago by
caro-ca
▴ 20
5
votes
2
replies
5.2k
views
MUMmer aligments: How to visualize better the plots?
MUMmerplots
updated 4.5 years ago by
joneill4x
▴ 160 • written 4.5 years ago by
caro-ca
▴ 20
0
votes
0
replies
590
views
How does Dnadiff deal with gap penalties?
MUMmer
dnadiff
alignments
gap penalties
4.5 years ago by
caro-ca
▴ 20
0
votes
0
replies
625
views
Go plots in Blast2go
blast2go
GO terms
Interproscan
graphics
4.5 years ago by
caro-ca
▴ 20
3
votes
3
replies
1.0k
views
Genome annotation visual representation
Interproscan
charts
easy visualization
updated 4.5 years ago by
jonasmlambert
▴ 40 • written 4.5 years ago by
caro-ca
▴ 20
4
votes
4
replies
1.3k
views
Use of export command
Busco
Linux
updated 4.6 years ago by
lakhujanivijay
5.8k • written 4.6 years ago by
caro-ca
▴ 20
7
votes
8
replies
1.2k
views
Blast an organism against a downloaded database
BLAST
ncbi
databases
Nanopore
updated 4.6 years ago by
Mensur Dlakic
★ 27k • written 4.6 years ago by
caro-ca
▴ 20
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