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Comment: Comment: How to open/work with wig or tdf files
18 months ago by Apex92 ▴ 280
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3
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1.4k
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How to open/work with wig or tdf files
IGV sequencing wig rna-seq tdf
18 months ago by Apex92 ▴ 280
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743
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Comment: Comment: The concept of differentially expressed genes at exon and intron level
20 months ago by Apex92 ▴ 280
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3
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743
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The concept of differentially expressed genes at exon and intron level
transcription DEG RNA-Seq sequencing genome
updated 20 months ago by 15k • written 20 months ago by ▴ 280
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Comment: Comment: How to choose one TSS for every gene using Gencode annotation file?
20 months ago by Apex92 ▴ 280
3
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3
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1.1k
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How to choose one TSS for every gene using Gencode annotation file?
TSS transcription sequencing RNA-seq
20 months ago by Apex92 ▴ 280
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0
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887
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Comment: Comment: Cell cycle arrest analysis using bulk RNA-seq
21 months ago by Apex92 ▴ 280
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2
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887
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Cell cycle arrest analysis using bulk RNA-seq
rna-seq RNA-Seq sequencing cell-cycle genome
21 months ago by Apex92 ▴ 280
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327
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How robust is rMATS when swapping samples?
splicing rmats RNA-seq STAR alternative
22 months ago by Apex92 ▴ 280
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0
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862
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Comment: Comment: Error when using edgeR with only two samples
23 months ago by Apex92 ▴ 280
4
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2
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862
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Error when using edgeR with only two samples
RNA-seq DGE sequencing edgeR
23 months ago by Apex92 ▴ 280
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1
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1.2k
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Comment: Comment: edgeR glmRT code error message
23 months ago by Apex92 ▴ 280
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1
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798
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Comment: Comment: How to perform differential gene expression analysis with only one replicate in
23 months ago by Apex92 ▴ 280
2
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4
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798
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How to perform differential gene expression analysis with only one replicate in each condition
RNA-seq DEG DESeq2 sequencing
updated 23 months ago by 54k • written 23 months ago by ▴ 280
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858
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Answer: Answer: miRNA help
2.1 years ago by Apex92 ▴ 280
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0
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611
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How to edit a SAM file using pysam
sam pysam mapping algnment bam
2.1 years ago by Apex92 ▴ 280
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0
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1.0k
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Comment: Comment: What could be a good balance between baseMean and Log2FoldChange?
2.1 years ago by Apex92 ▴ 280
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5
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1.0k
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What could be a good balance between baseMean and Log2FoldChange?
expression gene statistics DESeq2 DEG
2.1 years ago by Apex92 ▴ 280
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1
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1.0k
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Answer: Answer: What could be a good balance between baseMean and Log2FoldChange?
2.1 years ago by Apex92 ▴ 280
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0
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1.0k
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Comment: Comment: What could be a good balance between baseMean and Log2FoldChange?
2.1 years ago by Apex92 ▴ 280
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0
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556
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Comment: Comment: What is a suitable Gene Ontology Enrichment Analaysis tool?
2.1 years ago by Apex92 ▴ 280
3
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2
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556
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What is a suitable Gene Ontology Enrichment Analaysis tool?
statistics Enrichment Ontology
2.1 years ago by Apex92 ▴ 280
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0
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564
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What is the latest and reliable Gene Ontology analysis tool in Python
sequencing ontology genome enrichr RNA-Seq
2.1 years ago by Apex92 ▴ 280
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2
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2.6k
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Comment: Comment: NextSeq 2000 bcl2fastq conversion
2.2 years ago by Apex92 ▴ 280
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4
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2.6k
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NextSeq 2000 bcl2fastq conversion
sequencing bcl2fastq fastq
updated 2.2 years ago by 142k • written 2.2 years ago by ▴ 280
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2
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1.7k
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bcl2fastq error with RunInfo.xml
sequencing bcl2fastq fastq
updated 12 months ago by • 0 • written 2.2 years ago by ▴ 280
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2
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878
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Comment: Comment: How to get rid of mis-assigned reads without having bcl files or index informati
2.2 years ago by Apex92 ▴ 280
2
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4
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878
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How to get rid of mis-assigned reads without having bcl files or index information?
alignment fastq RNA-seq
updated 2.2 years ago by 14k • written 2.2 years ago by ▴ 280
4
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1
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1.9k
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Answer: Answer: help in my miRNA analysis
2.2 years ago by Apex92 ▴ 280
1
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0
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567
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Comment: Comment: Low number of differentially expressed genes in scRNAseq
2.2 years ago by Apex92 ▴ 280
1
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0
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1.6k
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Comment: Comment: Analyzing and slicing FASTQ file entries using Python
2.2 years ago by Apex92 ▴ 280
1
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1
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1.6k
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Comment: Comment: Analyzing and slicing FASTQ file entries using Python
2.2 years ago by Apex92 ▴ 280
6
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7
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1.6k
views
Analyzing and slicing FASTQ file entries using Python
biopython sequence performance FASTQ
updated 2.2 years ago by 161k • written 2.2 years ago by ▴ 280
1
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1
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1.6k
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Answer: Answer: Analyzing and slicing FASTQ file entries using Python
2.2 years ago by Apex92 ▴ 280
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1
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1.0k
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Comment: Comment: How to output FASTQ file with four lines per sequence?
2.2 years ago by Apex92 ▴ 280
1
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3
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1.0k
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How to output FASTQ file with four lines per sequence?
biopython python fastq
updated 2.2 years ago by 21k • written 2.2 years ago by ▴ 280
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1
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713
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Comment: Comment: How many skipped exons is expected by chance?
2.2 years ago by Apex92 ▴ 280
1
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3
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713
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How many skipped exons is expected by chance?
splicing statistics exon rna-seq
updated 2.2 years ago by 100k • written 2.3 years ago by ▴ 280
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0
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924
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Comment: Comment: Any tool to detect differential splicing of a gene between samples?
2.3 years ago by Apex92 ▴ 280
2
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3
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924
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Any tool to detect differential splicing of a gene between samples?
sequence MISO splicing bam RNA-Seq
2.3 years ago by Apex92 ▴ 280
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1
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1.3k
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Comment: Comment: How to interpret arcs in the Sashimi plots (IGV)?
2.3 years ago by Apex92 ▴ 280
0
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3
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1.3k
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How to interpret arcs in the Sashimi plots (IGV)?
sequencing Sashimi IGV alignment rna-seq
updated 2.3 years ago by ★ 2.9k • written 2.3 years ago by ▴ 280
1
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0
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1.6k
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Comment: Comment: Why there are symmetric splice junctions on IGV?
2.3 years ago by Apex92 ▴ 280
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1
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1.6k
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Comment: Comment: Why there are symmetric splice junctions on IGV?
2.3 years ago by Apex92 ▴ 280
2
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7
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1.6k
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Why there are symmetric splice junctions on IGV?
sequencing bam IGV alignment rna-seq
2.3 years ago by Apex92 ▴ 280
0
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0
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1.1k
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Comment: Comment: The distance in nucleotide between two genes on different strands
2.6 years ago by Apex92 ▴ 280
0
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0
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19k
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Comment: Comment: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
2.6 years ago by Apex92 ▴ 280
0
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0
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524
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Segemehl -D option doesnt work for allowing differences
alignment RNA-Seq segemehl
updated 2.6 years ago by 43k • written 2.6 years ago by ▴ 280
1
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2
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2.2k
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How to calculate probability of overlap between two sets
overlap r statistics
updated 2.7 years ago by 100k • written 2.7 years ago by ▴ 280
0
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0
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2.4k
views
Comment: Comment: the --fraction option of featureCounts
2.8 years ago by Apex92 ▴ 280
185 results • Page 2 of 4
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