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Comment: Comment: If R package is already install - load it; if not installed, install it
2.0 years ago by melissachua90 ▴ 70
1
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7
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2.0k
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If R package is already install - load it; if not installed, install it
R
updated 24 months ago by 43k • written 2.0 years ago by ▴ 70
0
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0
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1.4k
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Comment: Comment: Filter out low coverage contigs
2.0 years ago by melissachua90 ▴ 70
0
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1
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1.4k
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Comment: Comment: Filter out low coverage contigs
2.0 years ago by melissachua90 ▴ 70
0
votes
1
reply
1.4k
views
Comment: Comment: Filter out low coverage contigs
2.0 years ago by melissachua90 ▴ 70
0
votes
7
replies
1.4k
views
Filter out low coverage contigs
bash contigs
updated 24 months ago by 21k • written 2.0 years ago by ▴ 70
2
votes
1
reply
1.3k
views
Samtools coverage vs samtools depth for % coverage
samtools
updated 2.0 years ago by 100k • written 2.0 years ago by ▴ 70
0
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1
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2.3k
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Comment: Comment: Estimate K-mer size for de novo assembly
2.0 years ago by melissachua90 ▴ 70
0
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4
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2.3k
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Estimate K-mer size for de novo assembly
de novo assembly soapdenovo estimation kmergenie K-mer
updated 2.0 years ago by ★ 27k • written 2.0 years ago by ▴ 70
0
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0
replies
1.2k
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Comment: Comment: [E::bwa_idx_load_from_disk] fail to locate the index files
2.0 years ago by melissachua90 ▴ 70
3
votes
5
replies
1.2k
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[E::bwa_idx_load_from_disk] fail to locate the index files
alignment BWA
2.0 years ago by melissachua90 ▴ 70
8
votes
3
replies
824
views
MultiQC output shows that data processing steps are ineffective
FastQC trimming
updated 11 months ago by 43k • written 2.0 years ago by ▴ 70
1
vote
1
reply
2.2k
views
How do I combine MAF files with clinical data to perform clinical enrichment analysis?
maftools maf mutation
updated 10 months ago by 43k • written 2.1 years ago by ▴ 70
0
votes
1
reply
851
views
Comment: Comment: Reference-based alignment using MUSKET
2.0 years ago by melissachua90 ▴ 70
5
votes
2
replies
894
views
How to determine the K-mer size?
k-mer
updated 2.0 years ago by ★ 27k • written 2.0 years ago by ▴ 70
0
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1
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851
views
Comment: Comment: Reference-based alignment using MUSKET
2.0 years ago by melissachua90 ▴ 70
0
votes
5
replies
851
views
Reference-based alignment using MUSKET
parallel HPC reference-based alignment MUSKET
updated 2.0 years ago by ★ 27k • written 2.0 years ago by ▴ 70
1
vote
2
replies
965
views
BBDuk returned java.lang.AssertionError
fasta bbduk fastq ngs
updated 2.0 years ago by 142k • written 2.0 years ago by ▴ 70
0
votes
1
reply
493
views
Paired-end dataset from SRA database
paired-end sra
updated 2.0 years ago by 82k • written 2.0 years ago by ▴ 70
0
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1
reply
667
views
Comment: Comment: Efficient way to download SRA dataset
2.0 years ago by melissachua90 ▴ 70
0
votes
4
replies
667
views
Efficient way to download SRA dataset
sra
updated 2.0 years ago by 4.6k • written 2.0 years ago by ▴ 70
0
votes
0
replies
728
views
Comment: Comment: Fastq-dump warning: too many reads at spot id
2.0 years ago by melissachua90 ▴ 70
1
vote
3
replies
728
views
Fastq-dump warning: too many reads at spot id
fastq-dump
updated 2.0 years ago by ★ 2.1k • written 2.0 years ago by ▴ 70
0
votes
2
replies
665
views
Pathway databases for machine learning
pathway machine database CNN learning
updated 2.0 years ago by 43k • written 2.0 years ago by ▴ 70
0
votes
1
reply
751
views
Comment: Comment: Missing SAM header when piping the samtools mpileup output to a VarScan call
2.1 years ago by melissachua90 ▴ 70
0
votes
4
replies
751
views
Missing SAM header when piping the samtools mpileup output to a VarScan call
samtools varscan
updated 2.1 years ago by 43k • written 2.1 years ago by ▴ 70
0
votes
1
reply
949
views
Comment: Comment: Varscan output variant file - is it the "true" file?
2.1 years ago by melissachua90 ▴ 70
0
votes
1
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949
views
Comment: Comment: Varscan output variant file - is it the "true" file?
2.1 years ago by melissachua90 ▴ 70
0
votes
4
replies
949
views
Varscan output variant file - is it the "true" file?
varscan
updated 2.1 years ago by 82k • written 2.1 years ago by ▴ 70
1
vote
1
reply
1.0k
views
IGV "Cannot find feature or locus" error
IGV
updated 2.1 years ago by 3.2k • written 2.1 years ago by ▴ 70
0
votes
1
reply
1.0k
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Comment: Comment: How do I load bam file and idx.fa file to the IGV browser?
2.1 years ago by melissachua90 ▴ 70
0
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1
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1.0k
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Comment: Comment: How do I load bam file and idx.fa file to the IGV browser?
2.1 years ago by melissachua90 ▴ 70
0
votes
5
replies
1.0k
views
How do I load bam file and idx.fa file to the IGV browser?
igv
updated 2.1 years ago by 142k • written 2.1 years ago by ▴ 70
0
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1
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1.1k
views
Comment: Comment: Use RSEM and Bowtie2 to align paired-end sequences
2.1 years ago by melissachua90 ▴ 70
0
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1
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1.1k
views
Comment: Comment: Use RSEM and Bowtie2 to align paired-end sequences
2.1 years ago by melissachua90 ▴ 70
1
vote
5
replies
1.1k
views
Use RSEM and Bowtie2 to align paired-end sequences
bowtie2 rsem
updated 2.1 years ago by 82k • written 2.1 years ago by ▴ 70
1
vote
2
replies
855
views
Bowtie produced empty .sam file
bowtie
updated 2.1 years ago by 11k • written 2.1 years ago by ▴ 70
0
votes
1
reply
2.2k
views
Comment: Comment: Bowtie: How do I map files to reference genome?
2.1 years ago by melissachua90 ▴ 70
0
votes
1
reply
710
views
Comment: Comment: Bowtie: Find the tradeoffs between seed length argument
2.1 years ago by melissachua90 ▴ 70
0
votes
3
replies
710
views
Bowtie: Find the tradeoffs between seed length argument
bowtie
updated 2.1 years ago by 82k • written 2.1 years ago by ▴ 70
0
votes
1
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2.2k
views
Comment: Comment: Bowtie: How do I map files to reference genome?
2.1 years ago by melissachua90 ▴ 70
0
votes
1
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2.2k
views
Comment: Comment: Bowtie: How do I map files to reference genome?
2.1 years ago by melissachua90 ▴ 70
0
votes
1
reply
2.2k
views
Comment: Comment: Bowtie: How do I map files to reference genome?
2.1 years ago by melissachua90 ▴ 70
0
votes
1
reply
2.2k
views
Comment: Comment: Bowtie: How do I map files to reference genome?
2.1 years ago by melissachua90 ▴ 70
0
votes
1
reply
2.2k
views
Comment: Comment: Bowtie: How do I map files to reference genome?
2.1 years ago by melissachua90 ▴ 70
0
votes
2
replies
2.2k
views
Comment: Comment: Bowtie: How do I map files to reference genome?
2.1 years ago by melissachua90 ▴ 70
0
votes
15
replies
2.2k
views
Bowtie: How do I map files to reference genome?
bowtie
updated 2.1 years ago by 8.7k • written 2.1 years ago by ▴ 70
0
votes
5
replies
979
views
How do I install MAQ software on Ubuntu?
MAQ
updated 2.1 years ago by ★ 2.9k • written 2.1 years ago by ▴ 70
0
votes
5
replies
822
views
How to generate paired-end FASTQ files from a reference sequence?
MAQ
updated 2.1 years ago by 142k • written 2.1 years ago by ▴ 70
0
votes
1
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822
views
Comment: Comment: How to generate paired-end FASTQ files from a reference sequence?
2.1 years ago by melissachua90 ▴ 70
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