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2
votes
3
replies
298
views
Bedtools sort -faidx producing empty output
faidx GFF bedtools
9 weeks ago by jamie.pike ▴ 80
1
vote
0
replies
298
views
Comment: Comment: Bedtools sort -faidx producing empty output
9 weeks ago by jamie.pike ▴ 80
0
votes
1
reply
298
views
Comment: Comment: Bedtools sort -faidx producing empty output
9 weeks ago by jamie.pike ▴ 80
0
votes
4
replies
2.2k
views
Maker Failed while doing repeat masking
maker annotation RepBase RepeatMasker
updated 22 months ago by 7.8k • written 2.9 years ago by ▴ 80
7
votes
3
replies
679
views
Tools for predicting protein function?
protein tools
updated 22 months ago by ▴ 390 • written 22 months ago by ▴ 80
3
votes
2
replies
521
views
Do I need to search for the complementary sequence when using regex?
regex
updated 2.2 years ago by 13k • written 2.2 years ago by ▴ 80
0
votes
0
replies
1.1k
views
Comment: C: Is there a way to produce/convert nhmmer output to a bed file?
2.4 years ago by jamie.pike ▴ 80
1
vote
1
reply
1.1k
views
Comment: C: Is there a way to produce/convert nhmmer output to a bed file?
2.4 years ago by jamie.pike ▴ 80
0
votes
1
reply
1.1k
views
Comment: C: Is there a way to produce/convert nhmmer output to a bed file?
2.4 years ago by jamie.pike ▴ 80
0
votes
0
replies
1.1k
views
Comment: C: Is there a way to produce/convert nhmmer output to a bed file?
2.4 years ago by jamie.pike ▴ 80
7
votes
7
replies
1.1k
views
Is there a way to produce/convert nhmmer output to a bed file?
bed nhmmer
updated 8 days ago by 38k • written 2.4 years ago by ▴ 80
0
votes
2
replies
1.1k
views
Visualise CD-HIT clusters?
clustering data visualisation CD-HIT
updated 2.5 years ago by 20 • written 2.6 years ago by ▴ 80
0
votes
0
replies
1.1k
views
Comment: C: Visualise CD-HIT clusters?
2.6 years ago by jamie.pike ▴ 80
0
votes
0
replies
795
views
Comment: C: *** buffer overflow detected ***: blastclust terminated?? Is there another way t
2.6 years ago by jamie.pike ▴ 80
3
votes
2
replies
795
views
*** buffer overflow detected ***: blastclust terminated?? Is there another way to create a non-redundant set of proteins?
blastclust non-redundant set sequence protein
2.6 years ago by jamie.pike ▴ 80
1
vote
0
replies
1.3k
views
Comment: C: Python: regular expression searching error
2.6 years ago by jamie.pike ▴ 80
0
votes
0
replies
1.3k
views
Comment: C: Python: regular expression searching error
2.6 years ago by jamie.pike ▴ 80
0
votes
1
reply
1.3k
views
Comment: C: Python: regular expression searching error
2.6 years ago by jamie.pike ▴ 80
8
votes
13
replies
1.3k
views
Python: regular expression searching error
python Regular Expression Error BioPython SeqIO
updated 2.6 years ago by 20k • written 2.6 years ago by ▴ 80
0
votes
0
replies
1.3k
views
Comment: C: Python: regular expression searching error
2.6 years ago by jamie.pike ▴ 80
0
votes
1
reply
1.3k
views
Answer: A: Python: regular expression searching error
2.6 years ago by jamie.pike ▴ 80
0
votes
0
replies
1.3k
views
Comment: C: Python: regular expression searching error
2.6 years ago by jamie.pike ▴ 80
0
votes
2
replies
1.3k
views
Comment: C: Python: regular expression searching error
2.6 years ago by jamie.pike ▴ 80
0
votes
1
reply
467
views
Comment: C: Replace matching sections of two fastas
2.6 years ago by jamie.pike ▴ 80
2
votes
3
replies
467
views
Replace matching sections of two fastas
fasta awk
updated 2.7 years ago by 153k • written 2.7 years ago by ▴ 80
0
votes
0
replies
1.5k
views
Comment: C: Samtools faidx not printing reverse complement
2.7 years ago by jamie.pike ▴ 80
0
votes
0
replies
1.5k
views
Comment: C: Samtools faidx not printing reverse complement
2.7 years ago by jamie.pike ▴ 80
3
votes
4
replies
1.5k
views
Samtools faidx not printing reverse complement
samtools faidx samtools reverse complement
2.7 years ago by jamie.pike ▴ 80
0
votes
0
replies
1.4k
views
Comment: C: SignalP is adding the extraneous "bin"
2.8 years ago by jamie.pike ▴ 80
5
votes
2
replies
1.4k
views
SignalP is adding the extraneous "bin"
SignalIP path bin install
updated 2.8 years ago by ★ 23k • written 2.8 years ago by ▴ 80
1
vote
0
replies
1.4k
views
Answer: A: Bedtools intersect not reporting all overlaps
2.8 years ago by jamie.pike ▴ 80
4
votes
5
replies
1.4k
views
Bedtools intersect not reporting all overlaps
BED bedtools intersect GFF Artemis
updated 17 days ago by 38k • written 2.8 years ago by ▴ 80
0
votes
0
replies
1.4k
views
Comment: C: Bedtools intersect not reporting all overlaps
2.8 years ago by jamie.pike ▴ 80
0
votes
0
replies
1.4k
views
Comment: C: Bedtools intersect not reporting all overlaps
2.8 years ago by jamie.pike ▴ 80
0
votes
0
replies
775
views
Comment: C: Error setting up BUSCO for loop
2.8 years ago by jamie.pike ▴ 80
2
votes
2
replies
775
views
Error setting up BUSCO for loop
BUSCO for loop BASH Syntax error
2.8 years ago by jamie.pike ▴ 80
2
votes
2
replies
843
views
Filtering Augustus GTF based on protein sequence
Augustus GTF Protein sequence Awk
2.8 years ago by jamie.pike ▴ 80
0
votes
0
replies
1.4k
views
Comment: C: Bedtools intersect error in record file
2.8 years ago by jamie.pike ▴ 80
3
votes
2
replies
1.4k
views
Bedtools intersect error in record file
Bedtools intersect
updated 17 days ago by 38k • written 2.8 years ago by ▴ 80
0
votes
0
replies
685
views
Comment: C: MAKER2 no FASTAs generated
2.9 years ago by jamie.pike ▴ 80
0
votes
1
reply
685
views
Comment: C: MAKER2 no FASTAs generated
2.9 years ago by jamie.pike ▴ 80
2
votes
4
replies
685
views
MAKER2 no FASTAs generated
MAKER FASTA fasta_merge genome annotation
2.9 years ago by jamie.pike ▴ 80
0
votes
1
reply
712
views
Comment: C: Can BLASTn be used to calculate sequence similarity?
2.9 years ago by jamie.pike ▴ 80
1
vote
3
replies
712
views
Can BLASTn be used to calculate sequence similarity?
BLASTN Similarity identity
updated 2.9 years ago by 14k • written 2.9 years ago by ▴ 80
0
votes
1
reply
575
views
Comment: C: Methods of annotating a genome?
2.9 years ago by jamie.pike ▴ 80
0
votes
3
replies
575
views
Methods of annotating a genome?
annotation maker fgenesh genome gene
2.9 years ago by jamie.pike ▴ 80
0
votes
1
reply
868
views
Comment: C: Automate finding locations of BLASTN hits in genome browser?
3.0 years ago by jamie.pike ▴ 80
0
votes
0
replies
868
views
Comment: C: Automate finding locations of BLASTN hits in genome browser?
3.0 years ago by jamie.pike ▴ 80
5
votes
5
replies
868
views
Automate finding locations of BLASTN hits in genome browser?
BLASTN Genome Browser
updated 3.0 years ago by 34k • written 3.0 years ago by ▴ 80
0
votes
0
replies
553
views
Matching Query ID and Subject ID in a new file
BLASTN awk
3.0 years ago by jamie.pike ▴ 80
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