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7
votes
8
replies
2.9k
views
Is there a way to produce/convert nhmmer output to a bed file?
bed nhmmer
updated 4 weeks ago by 8.1k • written 5.1 years ago by ▴ 90
8
votes
4
replies
2.1k
views
Tools for predicting protein function?
protein
updated 5 months ago by ▴ 20 • written 4.5 years ago by ▴ 90
2
votes
5
replies
2.0k
views
MAKER2 no FASTAs generated
MAKER FASTA fasta_merge genome annotation
updated 17 months ago by • 0 • written 5.5 years ago by ▴ 90
1
vote
1
reply
1.6k
views
Quast contig values not matching
quast
updated 2.3 years ago by ▴ 10 • written 2.4 years ago by ▴ 90
0
votes
1
reply
2.8k
views
Comment: Comment: Italicise annotations with pheatmap
2.5 years ago by jamie.pike ▴ 90
0
votes
0
replies
2.8k
views
Comment: Comment: Italicise annotations with pheatmap
2.5 years ago by jamie.pike ▴ 90
8
votes
6
replies
2.8k
views
Italicise annotations with pheatmap
R Pheatmap
updated 2.5 years ago by 90k • written 2.5 years ago by ▴ 90
2
votes
3
replies
1.2k
views
Bedtools sort -faidx producing empty output
bedtools GFF
updated 2.4 years ago by 45k • written 2.8 years ago by ▴ 90
1
vote
0
replies
1.2k
views
Comment: Comment: Bedtools sort -faidx producing empty output
2.8 years ago by jamie.pike ▴ 90
0
votes
1
reply
1.2k
views
Comment: Comment: Bedtools sort -faidx producing empty output
2.8 years ago by jamie.pike ▴ 90
0
votes
4
replies
4.3k
views
Maker Failed while doing repeat masking
maker annotation RepBase RepeatMasker
updated 4.5 years ago by 9.3k • written 5.6 years ago by ▴ 90
3
votes
2
replies
1.3k
views
Do I need to search for the complementary sequence when using regex?
regex
updated 4.9 years ago by 13k • written 4.9 years ago by ▴ 90
0
votes
0
replies
2.9k
views
Comment: C: Is there a way to produce/convert nhmmer output to a bed file?
5.1 years ago by jamie.pike ▴ 90
1
vote
1
reply
2.9k
views
Comment: C: Is there a way to produce/convert nhmmer output to a bed file?
5.1 years ago by jamie.pike ▴ 90
0
votes
1
reply
2.9k
views
Comment: C: Is there a way to produce/convert nhmmer output to a bed file?
5.1 years ago by jamie.pike ▴ 90
0
votes
0
replies
2.9k
views
Comment: C: Is there a way to produce/convert nhmmer output to a bed file?
5.1 years ago by jamie.pike ▴ 90
0
votes
2
replies
1.9k
views
Visualise CD-HIT clusters?
clustering data visualisation CD-HIT
updated 5.1 years ago by 20 • written 5.3 years ago by ▴ 90
0
votes
0
replies
1.9k
views
Comment: C: Visualise CD-HIT clusters?
5.3 years ago by jamie.pike ▴ 90
0
votes
0
replies
1.5k
views
Comment: C: *** buffer overflow detected ***: blastclust terminated?? Is there another way t
5.3 years ago by jamie.pike ▴ 90
3
votes
2
replies
1.5k
views
*** buffer overflow detected ***: blastclust terminated?? Is there another way to create a non-redundant set of proteins?
blastclust non-redundant set sequence protein
5.3 years ago by jamie.pike ▴ 90
1
vote
0
replies
3.4k
views
Comment: C: Python: regular expression searching error
5.3 years ago by jamie.pike ▴ 90
0
votes
0
replies
3.4k
views
Comment: C: Python: regular expression searching error
5.3 years ago by jamie.pike ▴ 90
0
votes
1
reply
3.4k
views
Comment: C: Python: regular expression searching error
5.3 years ago by jamie.pike ▴ 90
8
votes
13
replies
3.4k
views
Python: regular expression searching error
python Regular Expression Error BioPython SeqIO
updated 5.3 years ago by 22k • written 5.3 years ago by ▴ 90
0
votes
0
replies
3.4k
views
Comment: C: Python: regular expression searching error
5.3 years ago by jamie.pike ▴ 90
0
votes
1
reply
3.4k
views
Answer: A: Python: regular expression searching error
5.3 years ago by jamie.pike ▴ 90
0
votes
0
replies
3.4k
views
Comment: C: Python: regular expression searching error
5.3 years ago by jamie.pike ▴ 90
0
votes
2
replies
3.4k
views
Comment: C: Python: regular expression searching error
5.3 years ago by jamie.pike ▴ 90
0
votes
1
reply
1.0k
views
Comment: C: Replace matching sections of two fastas
5.3 years ago by jamie.pike ▴ 90
2
votes
3
replies
1.0k
views
Replace matching sections of two fastas
fasta awk
updated 5.3 years ago by 166k • written 5.3 years ago by ▴ 90
0
votes
0
replies
3.1k
views
Comment: C: Samtools faidx not printing reverse complement
5.3 years ago by jamie.pike ▴ 90
0
votes
0
replies
3.1k
views
Comment: C: Samtools faidx not printing reverse complement
5.3 years ago by jamie.pike ▴ 90
3
votes
4
replies
3.1k
views
Samtools faidx not printing reverse complement
samtools faidx samtools reverse complement
5.3 years ago by jamie.pike ▴ 90
0
votes
0
replies
2.7k
views
Comment: C: SignalP is adding the extraneous "bin"
5.4 years ago by jamie.pike ▴ 90
5
votes
2
replies
2.7k
views
SignalP is adding the extraneous "bin"
SignalIP path bin install
updated 5.4 years ago by ★ 30k • written 5.4 years ago by ▴ 90
4
votes
5
replies
2.8k
views
Bedtools intersect not reporting all overlaps
BED bedtools intersect GFF Artemis
updated 2.7 years ago by 45k • written 5.5 years ago by ▴ 90
1
vote
0
replies
2.8k
views
Answer: A: Bedtools intersect not reporting all overlaps
5.4 years ago by jamie.pike ▴ 90
0
votes
0
replies
2.8k
views
Comment: C: Bedtools intersect not reporting all overlaps
5.4 years ago by jamie.pike ▴ 90
0
votes
0
replies
2.8k
views
Comment: C: Bedtools intersect not reporting all overlaps
5.5 years ago by jamie.pike ▴ 90
0
votes
0
replies
1.5k
views
Comment: C: Error setting up BUSCO for loop
5.5 years ago by jamie.pike ▴ 90
2
votes
2
replies
1.5k
views
Error setting up BUSCO for loop
BUSCO for loop BASH Syntax error
5.5 years ago by jamie.pike ▴ 90
2
votes
2
replies
1.6k
views
Filtering Augustus GTF based on protein sequence
Augustus GTF Protein sequence Awk
5.5 years ago by jamie.pike ▴ 90
0
votes
0
replies
2.4k
views
Comment: C: Bedtools intersect error in record file
5.5 years ago by jamie.pike ▴ 90
3
votes
2
replies
2.4k
views
Bedtools intersect error in record file
Bedtools intersect
updated 2.7 years ago by 45k • written 5.5 years ago by ▴ 90
0
votes
0
replies
2.0k
views
Comment: C: MAKER2 no FASTAs generated
5.5 years ago by jamie.pike ▴ 90
0
votes
1
reply
2.0k
views
Comment: C: MAKER2 no FASTAs generated
5.5 years ago by jamie.pike ▴ 90
0
votes
1
reply
2.0k
views
Comment: C: Can BLASTn be used to calculate sequence similarity?
5.5 years ago by jamie.pike ▴ 90
1
vote
3
replies
2.0k
views
Can BLASTn be used to calculate sequence similarity?
BLASTN Similarity identity
updated 5.5 years ago by 16k • written 5.5 years ago by ▴ 90
0
votes
1
reply
1.1k
views
Comment: C: Methods of annotating a genome?
5.6 years ago by jamie.pike ▴ 90
0
votes
3
replies
1.1k
views
Methods of annotating a genome?
annotation maker fgenesh genome gene
5.6 years ago by jamie.pike ▴ 90
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