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2
votes
2
replies
876
views
Looking for COVID-19 patient sample FastQ/VCF files
WGS COVID-19 VCF WES Sequencing
updated 3.0 years ago by 82k • written 3.0 years ago by ▴ 20
0
votes
0
replies
632
views
Does anyone know how to use an API call to PULL Quality Control (QC) data for sequencing runs on BaseSpace - Illumina Platform
API WGS WES BaseSpace QC
3.0 years ago by screadore ▴ 20
1
vote
2
replies
749
views
Does anyone know how to import 1000 Genomes Project VCF files into usegalaxy.org?
1000genomes concatenatr vcf galaxy
3.0 years ago by screadore ▴ 20
0
votes
0
replies
966
views
Need to extract specific VCF sample IDs from 1000Genomes project in the group 30x 1000 genomes genotypes aligned to gr38
1000genomes extraction vcf data
3.0 years ago by screadore ▴ 20
4
votes
5
replies
1.5k
views
6 follow
Looking for a Whole Genome Sequencing GrCH38 Control group of roughly 250 samples
wgs control whole
updated 3.0 years ago by 2.8k • written 3.0 years ago by ▴ 20
5
votes
3
replies
1.4k
views
What Machine Learning, AI, Deep Learning, & Neural Network Python packages do you use in Bioinformatics and/or whole genome sequencing annotation?
data python sequencing
updated 3.1 years ago by ★ 16k • written 3.1 years ago by ▴ 20
0
votes
0
replies
618
views
Looking to annotate concatenated VCF files on Galaxy for Hg19 reference genome. Need setup guidance.
genome next-gen sequencing sequence gene
updated 3.1 years ago by 20 • written 3.2 years ago by ▴ 20
0
votes
1
reply
725
views
Need Insight into good courses/certifications to get as a bioinformatics scientist/computational biologist to boost resume & skills.
next-gen genome gene sequencing
updated 3.2 years ago by • 0 • written 3.2 years ago by ▴ 20
11
votes
26
replies
3.2k
views
I need to extract the FASTA reads from a specific region from a chromosome in a BAM file format.
genome sequencing gene alignment next-gen
updated 3.2 years ago by 14k • written 3.2 years ago by ▴ 20
5
votes
3
replies
2.4k
views
Does anyone know any ANNOVAR alternatives for Whole Genome Sequencing with flexible filters for annotations of a VCF file?
sequencing genome annotations
updated 3.2 years ago by ▴ 60 • written 3.8 years ago by ▴ 20
2
votes
4
replies
1.2k
views
How can I visualize the Pileup to determine if there is a 5 BP deletion?
sequencing genome sequence alignment
updated 3.3 years ago by 87k • written 3.3 years ago by ▴ 20
0
votes
0
replies
385
views
Looking to extract Gene disorders for a list of specific genes from Decipher
gene
3.4 years ago by screadore ▴ 20
3
votes
4
replies
978
views
Can someone provide me insight into how to extract a specific region of a FastQ file to run BLAST on?
genome sequence Assembly alignment
updated 3.4 years ago by ★ 16k • written 3.4 years ago by ▴ 20
1
vote
3
replies
734
views
Does anyone have a list of Copy Number Variation (CNV) Databases? If so please share.
CNV Database genome gene
updated 3.4 years ago by 161k • written 3.4 years ago by ▴ 20
1
vote
2
replies
609
views
How to Compare Our Control VS. Sample Peaks from CHiP Seq
ChIP-Seq
updated 3.5 years ago by 43k • written 3.5 years ago by ▴ 20
2
votes
3
replies
710
views
Trying to understand BWA output and what it could mean? Please help!
alignment
updated 3.5 years ago by 13k • written 3.5 years ago by ▴ 20
1
vote
7
replies
788
views
Need a fast way to see overlap of gene list with Scoliosis.
gene
updated 3.5 years ago by ★ 16k • written 3.5 years ago by ▴ 20
4
votes
6
replies
776
views
Does anyone know where I can get whole genome sequence eukaryotic trio FASTA files?
sequencing sequence genome
3.8 years ago by screadore ▴ 20
2
votes
1
reply
604
views
Where can I find a whole genome sequence FASTA file for a mother, father, child or just a child and one parent?
genome sequencing
3.8 years ago by screadore ▴ 20
0
votes
2
replies
1.5k
views
Having trouble running ANNOVAR annotator for the first time please help!
software error
3.8 years ago by screadore ▴ 20
11
votes
12
replies
1.4k
views
Need help changing RNA-seq code from histat aligner into Star aligner please.
RNA-Seq
3.9 years ago by screadore ▴ 20
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