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0
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333
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How do I use msigdb to annotate the single cell data?
msigdb single-cell
updated 4 months ago by 44k • written 4 months ago by ▴ 110
2
votes
1
reply
343
views
I am getting an error with Kallisto Bustools wrapper (kb) command to create an index
kb kallisto bustools
updated 5 months ago by ★ 7.0k • written 5 months ago by ▴ 110
2
votes
2
replies
490
views
Is the 10X multiome chemistry most similar similar to 10XV1, 10XV2, or 10XV3?
snRNAseq kallisto 10X
5 months ago by biotrekker ▴ 110
1
vote
2
replies
442
views
single nucleus RNA seq processing pipeline questions
demultiplexing snRNAseq
5 months ago by biotrekker ▴ 110
1
vote
3
replies
502
views
Can I go from kallisto results to SEURAT directly
cell bustoolls kallisto single
updated 6 months ago by ★ 7.0k • written 6 months ago by ▴ 110
0
votes
1
reply
293
views
How do I run fastq-dump on multiple prefetched files at once?
sratoolkit fastq-dump
updated 8 months ago by 164k • written 8 months ago by ▴ 110
2
votes
4
replies
664
views
How to I use prefetch (SRAtoolkit) on multiple accessions all at one?
sratoolkit prefetch
updated 8 months ago by 164k • written 8 months ago by ▴ 110
1
vote
5
replies
675
views
Is there a reason why fastq files from SRAExplorer and SRAToolkit are different sizes?
sraexplorer sratoolkit
updated 9 months ago by 148k • written 9 months ago by ▴ 110
2
votes
5
replies
1.0k
views
How do I use md5sum to check if my .fastq files from SRA Explorer have been downloaded correctly
scRNA-seq md5
updated 9 months ago by 86k • written 10 months ago by ▴ 110
2
votes
6
replies
1.1k
views
Error with fastq file corruption when downloading from SRA explorer using SLURM job
SRAExplorer corruption rna-seq SLURM
11 months ago by biotrekker ▴ 110
4
votes
4
replies
1.1k
views
How to combine different "groups" in DESeq2 constrast
rnaseq DESeq2
updated 21 months ago by 14k • written 21 months ago by ▴ 110
7
votes
1
reply
1.4k
views
How to use filterbyExpr with DESeq2?
DESeq2 RNA-seq edgeR
updated 21 months ago by 44k • written 21 months ago by ▴ 110
5
votes
2
replies
1.5k
views
How do I go from TPM to PCA (rna-seq)?
pca rnaseq tpm
updated 22 months ago by 86k • written 22 months ago by ▴ 110
0
votes
1
reply
522
views
How do I use tximport to annotate using ensemble annotation on GRCh37.75?
tximport ensemble annotation
updated 22 months ago by 86k • written 22 months ago by ▴ 110
0
votes
1
reply
915
views
What is the best way to process a metadata file that SEURAT can read?
metadata scRNAseq seurat
updated 2.3 years ago by ★ 1.7k • written 2.3 years ago by ▴ 110
12
votes
3
replies
3.2k
views
Analyzing single cell RNA seq with multiple samples and conditions
cell merge single seurat scRNAseq
2.3 years ago by biotrekker ▴ 110
1
vote
1
reply
1.3k
views
Need some help with next steps after getting fGSEA results from Microarray data.
microarray differential expression analysis fGSEA
updated 3.4 years ago by ▴ 20 • written 4.2 years ago by ▴ 110
0
votes
0
replies
797
views
I am having trouble running tmodhg with ECC library?
tmodhg microarray analysis
updated 4.0 years ago by 21k • written 4.0 years ago by ▴ 110
1
vote
2
replies
1.1k
views
I am having trouble downloading msigdb_v7.2.xml
msigdb
updated 4.1 years ago by 148k • written 4.1 years ago by ▴ 110
4
votes
23
replies
3.4k
views
Getting error when using lmfit (LIMMA) for Microarray data analysis
R Microarray LIMMA
4.3 years ago by biotrekker ▴ 110
1
vote
3
replies
2.2k
views
Cannot get read.celfiles() method to work?
R Micoroarray Omics oligo ff
updated 3.6 years ago by 88k • written 4.3 years ago by ▴ 110
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