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How do I run fastq-dump on multiple prefetched files at once?
sratoolkit fastq-dump
updated 18 days ago by 161k • written 18 days ago by ▴ 100
2
votes
4
replies
359
views
How to I use prefetch (SRAtoolkit) on multiple accessions all at one?
sratoolkit prefetch
updated 19 days ago by 161k • written 19 days ago by ▴ 100
1
vote
5
replies
415
views
Is there a reason why fastq files from SRAExplorer and SRAToolkit are different sizes?
sraexplorer sratoolkit
updated 6 weeks ago by 141k • written 6 weeks ago by ▴ 100
2
votes
5
replies
524
views
How do I use md5sum to check if my .fastq files from SRA Explorer have been downloaded correctly
scRNA-seq md5
updated 7 weeks ago by 82k • written 10 weeks ago by ▴ 100
2
votes
6
replies
664
views
Error with fastq file corruption when downloading from SRA explorer using SLURM job
SRAExplorer corruption rna-seq SLURM
3 months ago by biotrekker ▴ 100
4
votes
4
replies
830
views
How to combine different "groups" in DESeq2 constrast
rnaseq DESeq2
updated 13 months ago by 14k • written 13 months ago by ▴ 100
7
votes
1
reply
1.1k
views
How to use filterbyExpr with DESeq2?
DESeq2 RNA-seq edgeR
updated 13 months ago by 43k • written 13 months ago by ▴ 100
5
votes
2
replies
1.2k
views
How do I go from TPM to PCA (rna-seq)?
pca rnaseq tpm
updated 14 months ago by 82k • written 14 months ago by ▴ 100
0
votes
1
reply
409
views
How do I use tximport to annotate using ensemble annotation on GRCh37.75?
tximport ensemble annotation
updated 14 months ago by 82k • written 14 months ago by ▴ 100
0
votes
1
reply
717
views
What is the best way to process a metadata file that SEURAT can read?
metadata scRNAseq seurat
updated 20 months ago by ★ 1.6k • written 20 months ago by ▴ 100
12
votes
3
replies
2.4k
views
Analyzing single cell RNA seq with multiple samples and conditions
cell merge single seurat scRNAseq
20 months ago by biotrekker ▴ 100
1
vote
1
reply
1.2k
views
Need some help with next steps after getting fGSEA results from Microarray data.
microarray differential expression analysis fGSEA
updated 2.7 years ago by ▴ 20 • written 3.6 years ago by ▴ 100
0
votes
0
replies
711
views
I am having trouble running tmodhg with ECC library?
tmodhg microarray analysis
updated 3.4 years ago by 21k • written 3.4 years ago by ▴ 100
1
vote
2
replies
967
views
I am having trouble downloading msigdb_v7.2.xml
msigdb
updated 3.4 years ago by 141k • written 3.4 years ago by ▴ 100
4
votes
23
replies
2.7k
views
Getting error when using lmfit (LIMMA) for Microarray data analysis
R Microarray LIMMA
3.6 years ago by biotrekker ▴ 100
1
vote
3
replies
2.0k
views
Cannot get read.celfiles() method to work?
R Micoroarray Omics oligo ff
updated 3.0 years ago by 87k • written 3.7 years ago by ▴ 100
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