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428
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Comment: Comment: best pipeline/practice for analyzing WES for germline and somatic variant callin
9 weeks ago by epigene ▴ 590
0
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0
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428
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Comment: Comment: best pipeline/practice for analyzing WES for germline and somatic variant callin
9 weeks ago by epigene ▴ 590
0
votes
1
reply
428
views
Comment: Comment: best pipeline/practice for analyzing WES for germline and somatic variant callin
9 weeks ago by epigene ▴ 590
2
votes
5
replies
428
views
best pipeline/practice for analyzing WES for germline and somatic variant calling
calling variant
9 weeks ago by epigene ▴ 590
0
votes
1
reply
591
views
Comment: Comment: Annotate variants for cancer genomics studies
23 months ago by epigene ▴ 590
0
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3
replies
591
views
Annotate variants for cancer genomics studies
oncology cancer genomics variant
updated 23 months ago by ▴ 810 • written 23 months ago by ▴ 590
0
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0
replies
11k
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Comment: C: Get Snp Position From A Python Interface.
updated 3.5 years ago by 39k • written 7.6 years ago by ▴ 590
0
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0
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3.6k
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Comment: C: How To Generate Random Size Matched Background Regions
updated 3.6 years ago by 39k • written 7.8 years ago by ▴ 590
7
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6
replies
5.9k
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Adapter Trimming Length Cutoff And Quality Trimming Quality Cutoff
ngs
updated 3.7 years ago by ▴ 20 • written 9.2 years ago by ▴ 590
1
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0
replies
258k
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Comment: C: How To Filter Mapped Reads With Samtools
updated 4.9 years ago by 39k • written 6.7 years ago by ▴ 590
10
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8
replies
5.6k
views
Which source of annotation files to use, Ensembl or UCSC?
RNA-Seq ucsc ensembl
updated 6.0 years ago by 23k • written 6.8 years ago by ▴ 590
106
votes
23
replies
20k
views
16 follow
Forum: How Did You Learn Good Practice In Bioinformatics/Computational Biology?
bioinformatics
updated 3 months ago by 39k • written 9.3 years ago by ▴ 590
6
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0
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20k
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Answer: A: How Did You Learn Good Practice In Bioinformatics/Computational Biology?
6.3 years ago by epigene ▴ 590
1
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0
replies
20k
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Comment: C: How Did You Learn Good Practice In Bioinformatics/Computational Biology?
6.3 years ago by epigene ▴ 590
0
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1
reply
13k
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Comment: C: Subsample BAM to fixed number of alignments
6.4 years ago by epigene ▴ 590
0
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0
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2.0k
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Comment: C: how do aligners determine which reads to apply duplicate reads flag (1024)?
6.7 years ago by epigene ▴ 590
5
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5
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2.0k
views
how do aligners determine which reads to apply duplicate reads flag (1024)?
bwa sam
updated 6.7 years ago by 14k • written 6.7 years ago by ▴ 590
0
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1
reply
2.0k
views
Comment: C: how do aligners determine which reads to apply duplicate reads flag (1024)?
6.7 years ago by epigene ▴ 590
0
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0
replies
1.8k
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Comment: C: PE read flag 69 and 137 meaning
6.7 years ago by epigene ▴ 590
3
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2
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1.8k
views
PE read flag 69 and 137 meaning
sam flag
updated 6.7 years ago by ★ 4.8k • written 6.7 years ago by ▴ 590
0
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0
replies
2.2k
views
Comment: C: Where to download earlier versions of GWAS Catalog?
6.8 years ago by epigene ▴ 590
1
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4
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3.2k
views
Tools to analyze Illumina's HumanHT-12 v4 microarray expression data?
microarray gene expression
6.8 years ago by epigene ▴ 590
0
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2
replies
2.2k
views
Where to download earlier versions of GWAS Catalog?
GWAS
updated 10 months ago by 39k • written 7.6 years ago by ▴ 590
0
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0
replies
7.4k
views
Comment: C: SAM flag and select reads that map uniquely
6.8 years ago by epigene ▴ 590
0
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1
reply
31k
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Comment: C: Samtools View: Only Forward Or Reverse Strand
6.8 years ago by epigene ▴ 590
0
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1
reply
29k
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Comment: C: SAM FLAG for primary alignments, secondary alignments and what's their relations
6.8 years ago by epigene ▴ 590
0
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0
replies
8.4k
views
Comment: C: Why The Properly Paired Results From Bwa Mem Is An Odd Number
6.8 years ago by epigene ▴ 590
0
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1
reply
7.4k
views
Comment: C: SAM flag and select reads that map uniquely
6.8 years ago by epigene ▴ 590
0
votes
0
replies
5.7k
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Comment: C: Single-end strand specific Rna-Seq: how to separate alignments by strand
6.8 years ago by epigene ▴ 590
0
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0
replies
7.4k
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Comment: C: SAM flag and select reads that map uniquely
6.8 years ago by epigene ▴ 590
0
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1
reply
5.7k
views
Comment: C: Single-end strand specific Rna-Seq: how to separate alignments by strand
6.8 years ago by epigene ▴ 590
0
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1
reply
7.6k
views
Comment: C: UCSC hg19 gtf (genePredToGtf OS incompatibility)
6.8 years ago by epigene ▴ 590
0
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0
replies
34k
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Comment: C: In Sam Format, Clarify The Meaning Of The "0" Flag.
6.8 years ago by epigene ▴ 590
1
vote
1
reply
34k
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Comment: C: In Sam Format, Clarify The Meaning Of The "0" Flag.
6.8 years ago by epigene ▴ 590
0
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1
reply
29k
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Comment: C: SAM FLAG for primary alignments, secondary alignments and what's their relations
6.8 years ago by epigene ▴ 590
0
votes
1
reply
7.6k
views
Comment: C: UCSC hg19 gtf (genePredToGtf OS incompatibility)
6.8 years ago by epigene ▴ 590
27
votes
7
replies
29k
views
SAM FLAG for primary alignments, secondary alignments and what's their relations to uniqueness of mapping
SAM
updated 6.8 years ago by ★ 1.2k • written 6.8 years ago by ▴ 590
0
votes
0
replies
1.8k
views
Comment: C: Is there a tools to select alignment from BAM files with particular tag value?
6.8 years ago by epigene ▴ 590
1
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2
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1.8k
views
Is there a tools to select alignment from BAM files with particular tag value?
bam
updated 6.8 years ago by 154k • written 6.8 years ago by ▴ 590
1
vote
0
replies
25k
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Comment: C: What Does Cds And Exon Mean In A Gtf File?
6.8 years ago by epigene ▴ 590
0
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2
replies
5.6k
views
Comment: C: Which source of annotation files to use, Ensembl or UCSC?
6.8 years ago by epigene ▴ 590
0
votes
1
reply
18k
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Comment: C: HISAT2 command help
6.8 years ago by epigene ▴ 590
0
votes
1
reply
18k
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Comment: C: HISAT2 command help
6.8 years ago by epigene ▴ 590
0
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0
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2.1k
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Comment: C: how to set reporting options for RNA-seq reads alignment with hisat2?
6.8 years ago by epigene ▴ 590
1
vote
2
replies
2.1k
views
how to set reporting options for RNA-seq reads alignment with hisat2?
RNA-Seq hisat2
updated 6.8 years ago by 47k • written 6.8 years ago by ▴ 590
0
votes
0
replies
3.3k
views
Comment: C: GTAK VariantsToTable only generates header?
7.0 years ago by epigene ▴ 590
0
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1
reply
3.3k
views
Comment: C: GTAK VariantsToTable only generates header?
7.0 years ago by epigene ▴ 590
1
vote
4
replies
3.3k
views
GTAK VariantsToTable only generates header?
gatk VariantsToTable
7.0 years ago by epigene ▴ 590
0
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1
reply
7.4k
views
Comment: C: SAM flag and select reads that map uniquely
7.0 years ago by epigene ▴ 590
8
votes
8
replies
7.4k
views
SAM flag and select reads that map uniquely
samtools
updated 7.0 years ago by 103k • written 7.0 years ago by ▴ 590
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