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Showing :
questions
6
votes
3
replies
1.4k
views
drug sensitivity prediction
deseq2
oncopredict
R
drug
updated 21 days ago by
Luka
• 0 • written 2.3 years ago by
luffy
▴ 130
0
votes
1
reply
507
views
small RNAseq analysis of non human samples
lncRNA
sRNA
DEG
small-RNA
RNA-seq
updated 16 months ago by
Ram
44k • written 16 months ago by
luffy
▴ 130
1
vote
3
replies
2.1k
views
How to modify labels of complexheatmap
R
gene
oncoprint
complexheatmap
updated 18 months ago by
Ram
44k • written 18 months ago by
luffy
▴ 130
4
votes
5
replies
2.5k
views
How to correct unknown Batch effect?
PCA
gene-expression
DESeq2
RNA-seq
batch-effect
updated 9 months ago by
Ram
44k • written 22 months ago by
luffy
▴ 130
0
votes
0
replies
561
views
How to predict drug response or estimate drug sensitivity?
DEGs
drugbank
IC50
drug
R
2.3 years ago by
luffy
▴ 130
1
vote
3
replies
906
views
Calculate statistically significance of a small sample size
pearson
R
spearman
statistics
updated 2.4 years ago by
Asaf
10k • written 2.4 years ago by
luffy
▴ 130
4
votes
7
replies
1.6k
views
Variant identified, What next?
classification
variant
Exom
RNAseq
updated 2.5 years ago by
tomas4482
▴ 430 • written 2.5 years ago by
luffy
▴ 130
0
votes
4
replies
1.5k
views
Extract certain fasta sequnce from multi fasta file
python
regex
bash
fasta
updated 2.5 years ago by
Antonio R. Franco
★ 5.2k • written 2.5 years ago by
luffy
▴ 130
0
votes
4
replies
1.3k
views
Allele frequency for genes
frequency
gnomAD
gene
allele
3.4 years ago by
luffy
▴ 130
1
vote
1
reply
773
views
Plot a network based on correlation
correlation
plot
network
RNAseq
updated 3.6 years ago by
Kevin Blighe
89k • written 3.6 years ago by
luffy
▴ 130
1
vote
4
replies
1.4k
views
Coordinates long non-coding RNAs
gtf
python
bedtools
rna-seq
hg38
3.8 years ago by
luffy
▴ 130
3
votes
4
replies
3.3k
views
Help with CNV calling using ExomeDepth
exomedepth
R
CNV
gCNV
exome
updated 3.8 years ago by
Joakim
▴ 40 • written 4.2 years ago by
luffy
▴ 130
7
votes
12
replies
3.0k
views
RNAseq data analysis of pooled data
DESeq2
mapping
featurecounts
clustering
RNA-Seq
updated 3.8 years ago by
grant.hovhannisyan
★ 2.6k • written 3.8 years ago by
luffy
▴ 130
0
votes
3
replies
897
views
Query regarding variant calling and reporting
clinical exome
whole exome
compound heterozygous
3.9 years ago by
luffy
▴ 130
0
votes
0
replies
980
views
Suggestion for workflow to predict pathogenicity of SNV and INDELs
machine learning
python
pathogenicity
SVM
workflow
4.3 years ago by
luffy
▴ 130
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