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questions
0
votes
0
replies
288
views
multi-receptor virtual screening
Docking
screening
GLIDE
virtual
15 months ago by
mthm
▴ 50
0
votes
4
replies
1.4k
views
Indexing human chromosome assembly of GRCh38.p14 using STAR
star
18 months ago by
mthm
▴ 50
0
votes
2
replies
753
views
how to create a loop in R
R
offtopic
updated 19 months ago by
Ram
45k • written 19 months ago by
mthm
▴ 50
7
votes
3
replies
6.8k
views
how to convert minimap2 generated sam file to bam
minimap2
sam
bam
samtools
updated 22 months ago by
Ram
45k • written 2.1 years ago by
mthm
▴ 50
7
votes
4
replies
3.7k
views
fasta extract using seqkit grep regex pattern
seqkit
fasta
extract
pattern
regex
updated 2.5 years ago by
shenwei356
8.7k • written 2.5 years ago by
mthm
▴ 50
1
vote
3
replies
974
views
match bin number with the coordinate for each chromosome
chromosome
bins
coordinates
2.9 years ago by
mthm
▴ 50
5
votes
2
replies
782
views
trim fasta header, remove after hash (#)
header
fasta
hash
trim
updated 2.9 years ago by
cpad0112
21k • written 2.9 years ago by
mthm
▴ 50
1
vote
6
replies
7.7k
views
R, group data based on names and sum each group
manipulation
R
data
2.9 years ago by
mthm
▴ 50
4
votes
5
replies
6.7k
views
remove/replace unwanted character from a column in R
gsub
R
stringr
updated 3.0 years ago by
Basti
★ 2.1k • written 3.0 years ago by
mthm
▴ 50
2
votes
1
reply
672
views
How to define a column class in R, dataframe
colclasses
R
dataframe
3.0 years ago by
mthm
▴ 50
4
votes
4
replies
1.2k
views
conditional count of occurrence in R
R
occurrence
table
updated 2.9 years ago by
cpad0112
21k • written 3.0 years ago by
mthm
▴ 50
4
votes
4
replies
2.9k
views
masked vs unmasked genome annotation comparison
annotation
masked
3.0 years ago by
mthm
▴ 50
0
votes
2
replies
707
views
how to extract intergenic regions from BRAKER output?
intergenic
braker
annotation
3.0 years ago by
mthm
▴ 50
6
votes
10
replies
2.1k
views
how to append numbers to a column using awk and R?
append
awk
R
updated 3.0 years ago by
cpad0112
21k • written 3.0 years ago by
mthm
▴ 50
11
votes
4
replies
1.6k
views
seqkit replace multifasta file
seqkit
multifasta
updated 3.2 years ago by
shenwei356
8.7k • written 3.2 years ago by
mthm
▴ 50
6
votes
4
replies
3.1k
views
how to improve PCA visualization using ggplot?
eigenvalue
R
eigenvector
PCA
ggplot
3.4 years ago by
mthm
▴ 50
3
votes
2
replies
3.4k
views
cannot install package "ggbiplot" on R 4.0
ggbiplot
R
updated 3.5 years ago by
Basti
★ 2.1k • written 3.5 years ago by
mthm
▴ 50
2
votes
1
reply
1.4k
views
mapping long-reads to a reference library
bwa
TE
repeat
pacbio
updated 3.5 years ago by
ATpoint
87k • written 3.5 years ago by
mthm
▴ 50
0
votes
2
replies
1.0k
views
How to get SNPs (variant calling) from .gff or .align file?
gff
SNP
calling
varian
RepeatMasker
3.5 years ago by
mthm
▴ 50
2
votes
2
replies
1.3k
views
samtools mpileup fail to create bcf
mpileup
rfasta
samtools
3.5 years ago by
mthm
▴ 50
3
votes
3
replies
2.3k
views
Trimmomatic error: cannot execute binary file: Exec format error
adapter
trimmomatic
fastq
updated 3.6 years ago by
Istvan Albert
102k • written 3.6 years ago by
mthm
▴ 50
5
votes
6
replies
2.0k
views
how to replace a list of headers in fasta file that are not in order
fasta
reheader
updated 3.6 years ago by
GenoMax
150k • written 3.6 years ago by
mthm
▴ 50
5
votes
4
replies
1.7k
views
How to adjust sequence line to 60bp?
alignment
bioedit
geneious
updated 3.7 years ago by
GenoMax
150k • written 3.7 years ago by
mthm
▴ 50
4
votes
6
replies
3.7k
views
how to keep reads in a fasta file based on a seq id list in R?
R
filter
fasta
updated 3.9 years ago by
cpad0112
21k • written 3.9 years ago by
mthm
▴ 50
2
votes
2
replies
1.2k
views
how to have aligned region in fasta format using blastn?
blastn
fasta
updated 3.9 years ago by
Ram
45k • written 4.0 years ago by
mthm
▴ 50
2
votes
8
replies
2.2k
views
How to run Blastn on an input data with manual database?
ncbi+
blast
4.1 years ago by
mthm
▴ 50
3
votes
2
replies
743
views
plotCoverage.py error: Values instance has no attribute 'working_Dirpath'
deeptools
plotCoverage
4.1 years ago by
mthm
▴ 50
2
votes
1
reply
727
views
TEdenovo blasting with Recon perpetuates..!
TEdenovo
REPET
TE
4.1 years ago by
mthm
▴ 50
1
vote
1
reply
767
views
Error: mysql table already exists! Is it safe to delete the tables in mysql manually?
MYSQL
4.1 years ago by
mthm
▴ 50
2
votes
1
reply
2.2k
views
How to build and use a RepeatMasker custom library inside the singularity container?
te
container
singularity
repeat
4.2 years ago by
mthm
▴ 50
2
votes
1
reply
843
views
TEdenovo Blaster step 2 raise an error :Exception: ERROR when launching 'LaunchBlasterInParallel.py
te
docker
TEdenovo
REPET
4.2 years ago by
mthm
▴ 50
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