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questions
0
votes
0
replies
125
views
multi-receptor virtual screening
Docking
screening
GLIDE
virtual
3 months ago by
mthm
▴ 50
0
votes
4
replies
837
views
Indexing human chromosome assembly of GRCh38.p14 using STAR
star
7 months ago by
mthm
▴ 50
0
votes
2
replies
433
views
how to create a loop in R
R
offtopic
updated 7 months ago by
Ram
43k • written 7 months ago by
mthm
▴ 50
7
votes
3
replies
3.9k
views
how to convert minimap2 generated sam file to bam
minimap2
sam
bam
samtools
updated 10 months ago by
Ram
43k • written 14 months ago by
mthm
▴ 50
7
votes
4
replies
2.3k
views
fasta extract using seqkit grep regex pattern
seqkit
fasta
extract
pattern
regex
updated 18 months ago by
shenwei356
8.5k • written 18 months ago by
mthm
▴ 50
1
vote
3
replies
662
views
match bin number with the coordinate for each chromosome
chromosome
bins
coordinates
23 months ago by
mthm
▴ 50
5
votes
2
replies
563
views
trim fasta header, remove after hash (#)
header
fasta
hash
trim
updated 23 months ago by
cpad0112
21k • written 23 months ago by
mthm
▴ 50
1
vote
6
replies
5.7k
views
R, group data based on names and sum each group
manipulation
R
data
23 months ago by
mthm
▴ 50
4
votes
5
replies
3.6k
views
remove/replace unwanted character from a column in R
gsub
R
stringr
updated 2.0 years ago by
Basti
★ 2.0k • written 2.0 years ago by
mthm
▴ 50
2
votes
1
reply
460
views
How to define a column class in R, dataframe
colclasses
R
dataframe
2.0 years ago by
mthm
▴ 50
4
votes
4
replies
807
views
conditional count of occurrence in R
R
occurrence
table
updated 24 months ago by
cpad0112
21k • written 2.0 years ago by
mthm
▴ 50
4
votes
4
replies
2.0k
views
masked vs unmasked genome annotation comparison
annotation
masked
2.0 years ago by
mthm
▴ 50
0
votes
2
replies
465
views
how to extract intergenic regions from BRAKER output?
intergenic
braker
annotation
2.0 years ago by
mthm
▴ 50
6
votes
10
replies
1.5k
views
how to append numbers to a column using awk and R?
append
awk
R
updated 2.1 years ago by
cpad0112
21k • written 2.1 years ago by
mthm
▴ 50
11
votes
4
replies
1.2k
views
seqkit replace multifasta file
seqkit
multifasta
updated 2.2 years ago by
shenwei356
8.5k • written 2.2 years ago by
mthm
▴ 50
6
votes
4
replies
2.5k
views
how to improve PCA visualization using ggplot?
eigenvalue
R
eigenvector
PCA
ggplot
2.5 years ago by
mthm
▴ 50
3
votes
2
replies
3.1k
views
cannot install package "ggbiplot" on R 4.0
ggbiplot
R
updated 2.5 years ago by
Basti
★ 2.0k • written 2.5 years ago by
mthm
▴ 50
2
votes
1
reply
1.1k
views
mapping long-reads to a reference library
bwa
TE
repeat
pacbio
updated 2.6 years ago by
ATpoint
82k • written 2.6 years ago by
mthm
▴ 50
0
votes
2
replies
782
views
How to get SNPs (variant calling) from .gff or .align file?
gff
SNP
calling
varian
RepeatMasker
2.6 years ago by
mthm
▴ 50
2
votes
2
replies
994
views
samtools mpileup fail to create bcf
mpileup
rfasta
samtools
2.6 years ago by
mthm
▴ 50
3
votes
3
replies
1.8k
views
Trimmomatic error: cannot execute binary file: Exec format error
adapter
trimmomatic
fastq
updated 2.6 years ago by
Istvan Albert
100k • written 2.6 years ago by
mthm
▴ 50
5
votes
6
replies
1.5k
views
how to replace a list of headers in fasta file that are not in order
fasta
reheader
updated 2.7 years ago by
GenoMax
142k • written 2.7 years ago by
mthm
▴ 50
5
votes
4
replies
1.3k
views
How to adjust sequence line to 60bp?
alignment
bioedit
geneious
updated 2.7 years ago by
GenoMax
142k • written 2.7 years ago by
mthm
▴ 50
3
votes
6
replies
2.7k
views
how to keep reads in a fasta file based on a seq id list in R?
R
filter
fasta
updated 2.9 years ago by
cpad0112
21k • written 2.9 years ago by
mthm
▴ 50
2
votes
2
replies
977
views
how to have aligned region in fasta format using blastn?
blastn
fasta
updated 2.9 years ago by
Ram
43k • written 3.1 years ago by
mthm
▴ 50
2
votes
8
replies
1.5k
views
How to run Blastn on an input data with manual database?
ncbi+
blast
3.1 years ago by
mthm
▴ 50
3
votes
2
replies
582
views
plotCoverage.py error: Values instance has no attribute 'working_Dirpath'
deeptools
plotCoverage
3.2 years ago by
mthm
▴ 50
2
votes
1
reply
574
views
TEdenovo blasting with Recon perpetuates..!
TEdenovo
REPET
TE
3.2 years ago by
mthm
▴ 50
1
vote
1
reply
597
views
Error: mysql table already exists! Is it safe to delete the tables in mysql manually?
MYSQL
3.2 years ago by
mthm
▴ 50
2
votes
1
reply
1.6k
views
How to build and use a RepeatMasker custom library inside the singularity container?
te
container
singularity
repeat
3.2 years ago by
mthm
▴ 50
2
votes
1
reply
693
views
TEdenovo Blaster step 2 raise an error :Exception: ERROR when launching 'LaunchBlasterInParallel.py
te
docker
TEdenovo
REPET
3.2 years ago by
mthm
▴ 50
31 results • Page
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