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1.0k
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Comment: Comment: Limma model gives weird results
8 weeks ago by leranwangcs ▴ 150
3
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5
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1.0k
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Limma model gives weird results
model multivariate Limma
8 weeks ago by leranwangcs ▴ 150
0
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0
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1.0k
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Comment: Comment: Limma model gives weird results
5 months ago by leranwangcs ▴ 150
0
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0
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345
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How to get the differential abundant taxa of the first time point in time series analysis
LRT
9 months ago by leranwangcs ▴ 150
0
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4
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2.5k
views
Do I have to trim anything before I run MAGeCK?
MAGeCK
updated 12 months ago by • 0 • written 3.8 years ago by ▴ 150
0
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1
reply
1.6k
views
Comment: Comment: how to calculate correlations between sparse data
13 months ago by leranwangcs ▴ 150
5
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6
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1.6k
views
how to calculate correlations between sparse data
Correlations
updated 13 months ago by ★ 30k • written 13 months ago by ▴ 150
0
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1
reply
1.5k
views
Using adonis to include a random effect
mixed-model adonis
updated 17 months ago by 5.1k • written 17 months ago by ▴ 150
1
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3
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1.5k
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how to get the variance explained by the independent variable from multivariate distance matrix regression model with random effect?
multivariate-distance-matrix regression
updated 17 months ago by 5.1k • written 17 months ago by ▴ 150
0
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0
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1.5k
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Comment: Comment: how to get the variance explained by the independent variable from multivariate
17 months ago by leranwangcs ▴ 150
0
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0
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948
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Comment: Comment: CCA with random effects model
17 months ago by leranwangcs ▴ 150
1
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3
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948
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CCA with random effects model
CCA
updated 17 months ago by 15k • written 17 months ago by ▴ 150
0
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0
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484
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DESeq stats or Wilcoxon auc scores as input in pathway analysis
pathway-analysis
updated 18 months ago by 45k • written 18 months ago by ▴ 150
0
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0
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1.6k
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Comment: Comment: how to get entrez IDs from wormbase gene IDs
18 months ago by leranwangcs ▴ 150
0
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0
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1.6k
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Comment: Comment: how to get entrez IDs from wormbase gene IDs
18 months ago by leranwangcs ▴ 150
2
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6
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1.6k
views
how to get entrez IDs from wormbase gene IDs
wormbase
18 months ago by leranwangcs ▴ 150
0
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1
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1.6k
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Comment: Comment: how to get entrez IDs from wormbase gene IDs
19 months ago by leranwangcs ▴ 150
0
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0
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899
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Comment: Comment: Annotate wormbase genes
20 months ago by leranwangcs ▴ 150
1
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3
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899
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Annotate wormbase genes
RNA-seq
19 months ago by leranwangcs ▴ 150
0
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0
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1.5k
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Comment: Comment: RNAseq analysis: how to add new gene into an existing worm based reference
20 months ago by leranwangcs ▴ 150
0
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0
replies
1.5k
views
Comment: Comment: RNAseq analysis: how to add new gene into an existing worm based reference
20 months ago by leranwangcs ▴ 150
1
vote
6
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1.5k
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RNAseq analysis: how to add new gene into an existing worm based reference
RNA-seq
updated 20 months ago by ▴ 220 • written 20 months ago by ▴ 150
4
votes
1
reply
1.6k
views
How to interpret Clustree results?
scRNA clustering clustree
updated 2.1 years ago by 5.1k • written 2.1 years ago by ▴ 150
6
votes
1
reply
4.7k
views
How does FindNeighbors() and FindClusters() related and work?
seurat clustering
updated 2.1 years ago by ★ 3.1k • written 2.1 years ago by ▴ 150
0
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0
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2.4k
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Comment: Comment: t-SNE plot dots that are close together assigned to different clusters.
2.1 years ago by leranwangcs ▴ 150
4
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6
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2.4k
views
6 follow
t-SNE plot dots that are close together assigned to different clusters.
scRNA clustering
updated 2.1 years ago by 4.8k • written 2.1 years ago by ▴ 150
0
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1
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2.4k
views
Comment: Comment: TSNE plot dots that are close together assigned to different clusters.
2.1 years ago by leranwangcs ▴ 150
0
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2
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2.6k
views
Cannot color cells with 0 expression in certain color
Seurat scRNA
updated 3.0 years ago by ▴ 10 • written 4.4 years ago by ▴ 150
0
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0
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1.3k
views
Comment: Comment: fluteRRA() error: URL 'https://s3-eu-west-1.amazonaws.com....Timeout of 60 secon
3.2 years ago by leranwangcs ▴ 150
2
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3
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1.8k
views
RNASeq data has 3 files R1, R2 and R3, which one is the barcode file?
RNASeq
updated 3.2 years ago by 153k • written 3.2 years ago by ▴ 150
0
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1
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1.7k
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Comment: Comment: different number of samples from each individual
3.4 years ago by leranwangcs ▴ 150
0
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0
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1.7k
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Comment: Comment: different number of samples from each individual
3.4 years ago by leranwangcs ▴ 150
0
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5
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1.7k
views
different number of samples from each individual
statistics
updated 3.4 years ago by 89k • written 3.4 years ago by ▴ 150
0
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0
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1.4k
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Error in (function (edges, n = max(edges), directed = TRUE) : At type_indexededgelist.c:117 : cannot create empty graph with negative number of v…
tidygraph
3.4 years ago by leranwangcs ▴ 150
1
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1
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2.2k
views
Seurat subset cluster cell annotation
Seurat
updated 3.7 years ago by ★ 1.1k • written 3.7 years ago by ▴ 150
0
votes
4
replies
1.6k
views
DESeq confusing results
DESeq
updated 3.8 years ago by 10k • written 3.8 years ago by ▴ 150
0
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1
reply
1.6k
views
Comment: Comment: DESeq confusing results
3.8 years ago by leranwangcs ▴ 150
0
votes
1
reply
2.5k
views
Comment: Comment: Do I have to trim anything before I run MAGeCK?
3.8 years ago by leranwangcs ▴ 150
0
votes
1
reply
3.7k
views
Comment: Comment: How to get normalized count table from DESeq?
3.8 years ago by leranwangcs ▴ 150
3
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5
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3.7k
views
How to get normalized count table from DESeq?
DESeq
updated 3.8 years ago by 89k • written 3.8 years ago by ▴ 150
2
votes
4
replies
1.7k
views
How to know if certain gene is highly expressed compared to some common housekeeping gene in a cell line?
expression gene
updated 3.9 years ago by ★ 19k • written 3.9 years ago by ▴ 150
0
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1
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1.7k
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Comment: Comment: How to know if certain gene is highly expressed compared to some common housekee
3.9 years ago by leranwangcs ▴ 150
0
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2
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1.3k
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fluteRRA() error: URL 'https://s3-eu-west-1.amazonaws.com....Timeout of 60 seconds was reached
MAGeCK
3.2 years ago by leranwangcs ▴ 150
0
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1
reply
1.7k
views
Comment: Comment: Do we need to filter out the 0 counts sgRNA in CRISPR analysis?
3.9 years ago by leranwangcs ▴ 150
2
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3
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1.7k
views
Do we need to filter out the 0 counts sgRNA in CRISPR analysis?
CRISPR
updated 3.9 years ago by ▴ 160 • written 3.9 years ago by ▴ 150
1
vote
1
reply
1.4k
views
Can SingleR be reused to identify cell types after subsetting the original Seurat Object
scRNA
updated 4.0 years ago by ★ 19k • written 4.0 years ago by ▴ 150
0
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0
replies
969
views
PC p values in JackStrawPlot in Seurat are not in order
scRNA
4.0 years ago by leranwangcs ▴ 150
0
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0
replies
6.7k
views
Comment: Comment: Seurat re-clustering a cell subset but cell identity numbers are not completely
4.1 years ago by leranwangcs ▴ 150
2
votes
3
replies
6.7k
views
Seurat re-clustering a cell subset but cell identity numbers are not completely showing up
scRNA
4.1 years ago by leranwangcs ▴ 150
0
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0
replies
6.7k
views
Comment: Comment: Seurat re-clustering a cell subset but cell identity numbers are not completely
4.1 years ago by leranwangcs ▴ 150
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