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6
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13
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biomaRt: Timeout on getBM().
r biomart ensembl
updated 18 months ago by ★ 2.1k • written 4.3 years ago by ▴ 50
0
votes
0
replies
643
views
How to infer gene-level CNV status from ICGC data?
number CNV copy ICGC
2.9 years ago by lincaijin1994 ▴ 50
1
vote
4
replies
2.3k
views
How to interpret "pseudo count" in copy number data from CCLE?
number copy CNV
updated 3.1 years ago by • 0 • written 3.8 years ago by ▴ 50
0
votes
1
reply
946
views
Validate mutations from WGS using RNA-seq bam files in IGV?
RNA-Seq WGS IGV
updated 3.3 years ago by 3.4k • written 3.3 years ago by ▴ 50
1
vote
1
reply
931
views
How to understand or define some terms regarding copy number alterations?
number copy CNV
updated 3.5 years ago by ▴ 30 • written 3.9 years ago by ▴ 50
1
vote
0
replies
574
views
Should Combat be performed if I want to compare a signature score between TCGA RNA-seq and our own RNA-seq data?
combat Batch-Effect RNA-Seq
updated 14 months ago by 45k • written 3.6 years ago by ▴ 50
0
votes
0
replies
521
views
How to deal with it when EC50 is zero?
IC50 CTRP EC50
3.7 years ago by lincaijin1994 ▴ 50
1
vote
0
replies
760
views
How to run GISTIC 2.0 using CCLE segment file?
CNV copy GISTIC number
3.7 years ago by lincaijin1994 ▴ 50
0
votes
1
reply
2.3k
views
Comment: Comment: How to interpret "pseudo count" in copy number data from CCLE?
3.8 years ago by lincaijin1994 ▴ 50
0
votes
1
reply
915
views
RNA sequencing data and batch effect
combat Batch-Effect RNA-Seq
updated 14 months ago by 45k • written 3.8 years ago by ▴ 50
0
votes
0
replies
650
views
How to determine the cutoff of hypermutation?
TMB hypermutation
4.0 years ago by lincaijin1994 ▴ 50
0
votes
1
reply
2.1k
views
How maftools oncoplot classifies variant classifications
maftools oncoplot complexheatmap
updated 4.0 years ago by ★ 1.4k • written 4.6 years ago by ▴ 50
0
votes
0
replies
14k
views
Comment: Comment: TMB Tumor Mutation Burden
4.1 years ago by lincaijin1994 ▴ 50
0
votes
0
replies
1.1k
views
Tumor mutation burden calculation based on bed file?
TMB bed
4.1 years ago by lincaijin1994 ▴ 50
2
votes
3
replies
2.9k
views
How to subset vcf by sample and write?
bcftools vcf
updated 4.2 years ago by ▴ 480 • written 4.2 years ago by ▴ 50
0
votes
0
replies
14k
views
Comment: Comment: biomaRt: Timeout on getBM().
4.3 years ago by lincaijin1994 ▴ 50
0
votes
1
reply
14k
views
Comment: Comment: biomaRt: Timeout on getBM().
4.3 years ago by lincaijin1994 ▴ 50
0
votes
0
replies
14k
views
Comment: Comment: biomaRt: Timeout on getBM().
4.3 years ago by lincaijin1994 ▴ 50
0
votes
0
replies
14k
views
Comment: Comment: biomaRt: Timeout on getBM().
4.3 years ago by lincaijin1994 ▴ 50
0
votes
1
reply
1.9k
views
Comment: Comment: How to identify variants in the last or penultimate exons?
4.3 years ago by lincaijin1994 ▴ 50
2
votes
4
replies
1.9k
views
How to identify variants in the last or penultimate exons?
mapping variants exon
updated 4.3 years ago by 24k • written 4.3 years ago by ▴ 50
0
votes
0
replies
1.5k
views
Comment: Comment: Which database can be used to identify canonical splice site altering for ANNOVA
4.3 years ago by lincaijin1994 ▴ 50
0
votes
1
reply
1.3k
views
Duplicate ID in plink
GWAS plink
updated 4.4 years ago by 2.9k • written 4.4 years ago by ▴ 50
1
vote
1
reply
945
views
How to identify first codon (Methionine) misssense variants?
Mutation ANNOVAR Missense
updated 4.5 years ago by 166k • written 4.5 years ago by ▴ 50
0
votes
0
replies
1.5k
views
Comment: Comment: How to plot a image like this.
4.5 years ago by lincaijin1994 ▴ 50
0
votes
4
replies
1.5k
views
How to plot a image like this.
Genome R plot Cancer
updated 4.4 years ago by 45k • written 4.5 years ago by ▴ 50
0
votes
0
replies
1.3k
views
How maftools oncoplot deal with Splice_Site mutation
maftools oncoplot SNV Splicing
4.6 years ago by lincaijin1994 ▴ 50
2
votes
2
replies
2.0k
views
Difference between read depth, allelic depth and bam readcounts
bam vcf sequencing genotype
updated 4.6 years ago by ▴ 10 • written 4.6 years ago by ▴ 50
28 results • Page 1 of 1
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