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How to mark as QC fail reads with specific CIGARs
BAM PISCES
updated 2.1 years ago by 103k • written 2.1 years ago by ▴ 110
5
votes
3
replies
1.4k
views
Why do the same genetic variants sometimes result in different amino acids in the REVEL table?
REVEL
updated 2.1 years ago by 4.8k • written 2.1 years ago by ▴ 110
0
votes
0
replies
622
views
Pisces doesn't like high-quality reads when there is a soft-clip affecting the full read.
Pisces
updated 2.1 years ago by 89k • written 2.1 years ago by ▴ 110
0
votes
0
replies
489
views
Error processing chr 'chr7': Failed to process variants for MN01972:49:000H5KYMY:1:11102:26356:2968
PISCES
2.1 years ago by ManuelDB ▴ 110
9
votes
13
replies
3.1k
views
From primers sequence to Bed file
bedtools bwa
2.2 years ago by ManuelDB ▴ 110
1
vote
0
replies
3.1k
views
Answer: Answer: From primers sequence to Bed file
2.2 years ago by ManuelDB ▴ 110
0
votes
0
replies
3.1k
views
Comment: Comment: From primers sequence to Bed file
2.2 years ago by ManuelDB ▴ 110
0
votes
1
reply
3.1k
views
Comment: Comment: From primers sequence to Bed file
2.2 years ago by ManuelDB ▴ 110
0
votes
1
reply
3.1k
views
Comment: Comment: From primers sequence to Bed file
2.2 years ago by ManuelDB ▴ 110
0
votes
1
reply
3.1k
views
Comment: Comment: From primers sequence to Bed file
2.2 years ago by ManuelDB ▴ 110
0
votes
0
replies
3.1k
views
Comment: Comment: From primers sequence to Bed file
2.2 years ago by ManuelDB ▴ 110
2
votes
2
replies
939
views
I don't really understand what fold mean means
coverage
updated 2.3 years ago by 45k • written 2.3 years ago by ▴ 110
1
vote
0
replies
627
views
News: Good bioinformatics training resources
NGS
updated 2.3 years ago by 166k • written 2.3 years ago by ▴ 110
5
votes
9
replies
2.8k
views
6 follow
Count regions that overlap with python
CNV
updated 3.2 years ago by 36k • written 3.2 years ago by ▴ 110
0
votes
0
replies
2.8k
views
Answer: Answer: Count regions that overlap with python
3.2 years ago by ManuelDB ▴ 110
0
votes
1
reply
2.8k
views
Comment: Comment: Count regions that overlap with python
3.2 years ago by ManuelDB ▴ 110
0
votes
0
replies
2.8k
views
Comment: Comment: Count regions that overlap with python
3.2 years ago by ManuelDB ▴ 110
0
votes
0
replies
527
views
What Major Copy Number (MCC) and Copy Number (CN) means for CANVAS
CANVAS VCF
3.2 years ago by ManuelDB ▴ 110
0
votes
2
replies
887
views
Beedtools intersect unable to open a vcf file
VCF Bedtools
updated 2.3 years ago by 45k • written 3.3 years ago by ▴ 110
0
votes
1
reply
578
views
Morbidity inheritance dataset
inheritance Morbidity
updated 3.3 years ago by 56k • written 3.3 years ago by ▴ 110
1
vote
1
reply
970
views
What LOH means in CANVAS
CANVAS
updated 3.3 years ago by ★ 3.3k • written 3.4 years ago by ▴ 110
0
votes
1
reply
1.9k
views
Comment: Comment: How annotation can be validated
3.4 years ago by ManuelDB ▴ 110
0
votes
0
replies
1.9k
views
Comment: Comment: How annotation can be validated
3.4 years ago by ManuelDB ▴ 110
0
votes
0
replies
437
views
Can I infer the Zygosity of a CNV based on the number SNPs call in its region?
CNV
3.4 years ago by ManuelDB ▴ 110
0
votes
2
replies
1.9k
views
Comment: Comment: How annotation can be validated
3.4 years ago by ManuelDB ▴ 110
5
votes
1
reply
897
views
bedtools interset doesn't return a VCF file?
bedtools
updated 3.4 years ago by ★ 1.9k • written 3.4 years ago by ▴ 110
1
vote
1
reply
1.6k
views
How is the best way to filter a BED file to get specific exons from their gene ID
bed
updated 2.5 years ago by 45k • written 3.4 years ago by ▴ 110
2
votes
5
replies
2.2k
views
Strange error when using gzip.open with a VCF file
vcf gzip pandas
updated 3.4 years ago by ▴ 20 • written 3.6 years ago by ▴ 110
0
votes
0
replies
482
views
Overlapping CNVs against NSPs
Bedtools VCF CNV
3.4 years ago by ManuelDB ▴ 110
0
votes
0
replies
555
views
Does VarScan output work with NGS Benchmarking v1.6.?
VarScan NGS_Benchmarking
3.5 years ago by ManuelDB ▴ 110
0
votes
1
reply
4.3k
views
Comment: Comment: File write failed (wrong size) when filtering a bam file with interset
3.5 years ago by ManuelDB ▴ 110
1
vote
5
replies
4.3k
views
File write failed (wrong size) when filtering a bam file with interset
bedtools
updated 3.5 years ago by 89k • written 3.5 years ago by ▴ 110
0
votes
0
replies
4.3k
views
Comment: Comment: File write failed (wrong size) when filtering a bam file with interset
updated 3.5 years ago by 154k • written 3.5 years ago by ▴ 110
0
votes
0
replies
439
views
How to apply probabilistic method to call variants in a simple example.
Bayes-theorem
3.5 years ago by ManuelDB ▴ 110
0
votes
1
reply
1.4k
views
Comment: Comment: Calling variants after using different read alignment programs
3.5 years ago by ManuelDB ▴ 110
3
votes
3
replies
1.4k
views
Calling variants after using different read alignment programs
Bowtie2 IGV BWA
updated 3.5 years ago by ★ 3.0k • written 3.5 years ago by ▴ 110
1
vote
0
replies
1.1k
views
Comment: Comment: Unexpected results when alignment FASTQ files with different read alignments
3.5 years ago by ManuelDB ▴ 110
0
votes
2
replies
2.4k
views
Comment: Comment: Cannot read non-existent file: when executing MarkDuplicates in a script
3.5 years ago by ManuelDB ▴ 110
0
votes
0
replies
1.0k
views
Comment: Comment: Bus error (core dumped) when Aligning contigs to the reference in QUAST
3.5 years ago by ManuelDB ▴ 110
0
votes
0
replies
1.0k
views
Comment: Comment: Bus error (core dumped) when Aligning contigs to the reference in QUAST
3.5 years ago by ManuelDB ▴ 110
0
votes
3
replies
1.0k
views
Bus error (core dumped) when Aligning contigs to the reference in QUAST
Spades QUAST
3.5 years ago by ManuelDB ▴ 110
0
votes
1
reply
2.7k
views
Comment: Comment: Troubles running IGV on a server.
3.5 years ago by ManuelDB ▴ 110
0
votes
1
reply
2.7k
views
Comment: Comment: Troubles running IGV on a server.
3.5 years ago by ManuelDB ▴ 110
0
votes
1
reply
2.7k
views
Comment: Comment: Troubles running IGV on a server.
3.5 years ago by ManuelDB ▴ 110
0
votes
7
replies
2.7k
views
Troubles running IGV on a server.
IGV
updated 3.5 years ago by 154k • written 3.5 years ago by ▴ 110
0
votes
0
replies
4.1k
views
Comment: Comment: How do I count the real total reads from a fastq file?
3.5 years ago by ManuelDB ▴ 110
0
votes
1
reply
1.1k
views
Comment: Comment: Unexpected results when alignment FASTQ files with different read alignments
3.5 years ago by ManuelDB ▴ 110
4
votes
4
replies
1.1k
views
Unexpected results when alignment FASTQ files with different read alignments
Bowtie2 BWE
3.5 years ago by ManuelDB ▴ 110
8
votes
10
replies
4.2k
views
6 follow
Are not all duplicated reads removed when applying removal duplicated algorithms?
ngs FASTQC
updated 3.5 years ago by ★ 3.0k • written 3.5 years ago by ▴ 110
0
votes
2
replies
4.2k
views
Comment: Comment: Are not all duplicated reads removed when applying removal duplicated algorithms
3.5 years ago by ManuelDB ▴ 110
149 results • Page 2 of 3
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