Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
117,477 results • Page
5 of 2350
Sort: Rank
Rank
Views
Votes
Replies
4
votes
0
replies
201
views
Herald:
The Biostar Herald for Wednesday, June 05, 2024
herald
11 days ago by
Biostar
2.9k
1
vote
5
replies
351
views
Failure in inner_join
dplyr
r
updated 11 days ago by
zx8754
11k • written 11 days ago by
egascon
▴ 10
1
vote
2
replies
250
views
Please Help Me Understand GWAS Results
rMVP
GWAS
GAPIT
10 days ago by
chloek88
• 0
1
vote
3
replies
267
views
Could not parse a VCF file when using bcftools annotate
bcftools
updated 11 days ago by
Ram
44k • written 11 days ago by
ManuelDB
▴ 80
0
votes
1
reply
652
views
Changing gap open and extension penalties in muscle (or any other command line tool that works on mac, really)
multiple-sequence-alignment
updated 11 days ago by
erikatatianacs
• 0 • written 12 months ago by
sodiumnitrate
▴ 20
10
votes
8
replies
5.1k
views
Different bigwig file sizes between BedgraphToBigwig and bamCoverage
ucsc
bigwig
BedgraphToBigWig
bamCoverage
deeptools
updated 11 days ago by
QX
▴ 20 • written 5.8 years ago by
m98
▴ 420
0
votes
0
replies
118
views
News:
Course: Seafood Genomics
Seafood
FoodTraceability
Nanopore
Genomics
4 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
129
views
How to pre-process raw microarray data?
limma
microarray
WGCNA
updated 11 days ago by
GenoMax
143k • written 11 days ago by
egascon
▴ 10
1
vote
1
reply
163
views
Mass spectrometry data analysis
Proteome-discoverer
11 days ago by
iqra
• 0
0
votes
2
replies
220
views
Subset Seurat Object based on metadata
Seurat
4 days ago by
Bine
▴ 60
0
votes
1
reply
160
views
Mageck RRA is listing negative controls as high fold change in the gene summary
python
crispr
mageck
updated 11 days ago by
Ram
44k • written 11 days ago by
liz.b
• 0
0
votes
0
replies
115
views
ERROR with PRSKB
prskb
vcf
updated 11 days ago by
Ram
44k • written 11 days ago by
stefania.morelli92
• 0
0
votes
0
replies
115
views
Subunit Annotation in Genome Scale Models
database
engineering
uniprot
metabolic
enzyme
11 days ago by
shafiat.dewan
• 0
0
votes
0
replies
116
views
CIBERSORTx PHP Fatal error
CIBERSORTx
PHP
11 days ago by
JIWON KIM
• 0
0
votes
4
replies
265
views
Estimating haplotypes from sequencing reads
sequencing
reads
haplotypes
11 days ago by
Arline
• 0
0
votes
0
replies
144
views
Salmon low mapping rates
Reference
Mapping
Salmon
RNA-seq
updated 11 days ago by
GenoMax
143k • written 11 days ago by
L.Chang
• 0
2
votes
7
replies
355
views
Ensembl IDs <-> Gene Symbols mapping -- Using org.Hs.eg.db, biomaRt or EnsDb.Hsapiens.v86?
org.hs.eg.db
EnsDb.Hsapiens.v86
biomaRt
ensembl
updated 11 days ago by
tomas4482
▴ 410 • written 12 days ago by
DGTool
▴ 40
0
votes
1
reply
154
views
full lenght gene amplification from RNA seq data
RNAseq
offtopic
updated 11 days ago by
GenoMax
143k • written 12 days ago by
maryum
• 0
1
vote
3
replies
395
views
NCBI gene data
Variants
NCBI
updated 11 days ago by
GenoMax
143k • written 11 weeks ago by
chandrakala.m
• 0
0
votes
1
reply
165
views
Can I downsize ChIP-seq data for ChIP-ed samples
ChIP-seq
downsize
updated 7 days ago by
rfran010
▴ 960 • written 12 days ago by
Insect_gmx
• 0
10
votes
5
replies
9.6k
views
What Is The Meaning Of Snp Strand
snp
mapping
strand
updated 12 days ago by
Ömer An
▴ 260 • written 12.8 years ago by
Jonathan Hsu
▴ 60
0
votes
0
replies
237
views
I need to binary plink files of human genome reference build37, however, Im completely lost and have no idea from where to begin
bplinkfiles
human
genome
plink
updated 11 days ago by
GenoMax
143k • written 12 days ago by
Marcos
• 0
0
votes
0
replies
118
views
MrBayes 3.2.7a in mpi mode staying at stationary state from the beginning
mpi
mrbayes
stationary
beagle
library
12 days ago by
ricfoz
▴ 100
1
vote
14
replies
613
views
Deseq2 , Limma - the paired test seems to be incorrect - is it known problem ?
deseq
updated 10 days ago by
i.sudbery
19k • written 12 days ago by
Alexander
▴ 220
0
votes
3
replies
260
views
Transcriptome analysis of virus infected plants and their controls
DEG
heatmap
rna
updated 12 days ago by
manaswwm
▴ 510 • written 12 days ago by
diya
• 0
1
vote
2
replies
252
views
Monocle3 Download error in R
Rstudio
Monocle3
updated 12 days ago by
GenoMax
143k • written 13 days ago by
odi
▴ 10
0
votes
3
replies
218
views
[bwa_idx_build] fail to open file 'bwtsw' : No such file or directory
bwa
updated 12 days ago by
GenoMax
143k • written 12 days ago by
efan18808
• 0
0
votes
0
replies
134
views
wilcoxon signed rank test
anova
R
mixed-model
fixed-effect
random-effect
updated 12 days ago by
Ram
44k • written 12 days ago by
Andy
• 0
0
votes
2
replies
230
views
How to download multiple fasta sequences and keep them organized by what genome they came from
Blast
Sequences
12 days ago by
ATS
• 0
1
vote
3
replies
221
views
After DimHeatmap no histogram values
R
Seurat
DimHeatmap
updated 12 days ago by
Ram
44k • written 12 days ago by
Sander
• 0
0
votes
2
replies
199
views
Add tags/ header lines to a vcf file
bcftools
vcf
updated 12 days ago by
GenoMax
143k • written 12 days ago by
mahlet.teka
• 0
0
votes
0
replies
139
views
News:
Introduction to GWAS (online course)
GWAS
Imputation
Pipeline
updated 12 days ago by
Ram
44k • written 12 days ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
195
views
Making Changes to SequenceTubeMap
sequencetubemap
vg
12 days ago by
Mayank
▴ 10
1
vote
0
replies
287
views
Job:
[UK] Bioinformatics Programmer (Visa sponsored)
nextflow
galaxy
genomes
bacterial
metagenomics
12 days ago by
µbinfie
▴ 20
0
votes
0
replies
140
views
Help finding 10x genomics single cell dataset along with VCF
single-cell
variant-calling
updated 12 days ago by
Ram
44k • written 12 days ago by
debdeepto.m
• 0
0
votes
3
replies
248
views
WoLFPSort Installation
WOLFPSort
updated 12 days ago by
dthorbur
★ 2.0k • written 13 days ago by
Patadu94
• 0
3
votes
6
replies
355
views
Removing batch effect and doing differential gene expression analysis
RNA-seq
updated 4 days ago by
ATpoint
83k • written 12 days ago by
sarahlee.bekaert
• 0
0
votes
2
replies
415
views
Signac: RegionStats: Not all seqlevels present in supplied genome, trying to load regions beyond the boundaries of non-circular sequence "chr8"
Seurat
RegionStats
single-cell
ATAC-seq
Signac
updated 12 days ago by
GenoMax
143k • written 12 days ago by
yau
• 0
0
votes
1
reply
210
views
Comparing quality across samples in a VCF
vcf
updated 12 days ago by
Ram
44k • written 13 days ago by
ekirsch
• 0
2
votes
3
replies
239
views
Error using parasiteMart
WormBaseParasite
Ensembl
parasite_mart
Wormbase
BioMart
11 days ago by
Emily
▴ 20
0
votes
0
replies
89
views
miRNA prediction using mirMachine; what are the ways to study the functional significance of miRNAs?
annotation
assembly
mirmachine
mirna
12 days ago by
Vijith
▴ 30
6
votes
7
replies
336
views
6 follow
FASTQ header correction to remove .1 and .2 from paired end - SRA files
Fastq
updated 12 days ago by
noodle
▴ 590 • written 13 days ago by
genomics_buddy
• 0
0
votes
8
replies
2.8k
views
collapsePathways function throwing error
GSEA
fgsea
R
updated 13 days ago by
H_y
• 0 • written 15 months ago by
Pac314
▴ 10
0
votes
0
replies
112
views
Creation of appropriate model matricies for Surrogate Variable Analysis (SVA)
normalization
rna-seq
sva
microarray
12 days ago by
qile0317
• 0
0
votes
0
replies
99
views
How search for a Covariance Model match in a genome (with insertions)
infernal
hmmer
insertion
sequences
13 days ago by
Murucututu
• 0
0
votes
2
replies
293
views
Exome sequencing dataset for SKAT
SKAT
VEP
exome-sequencing
13 days ago by
aurina.arnatk
▴ 10
1
vote
0
replies
290
views
How to summarize dbCAN3 results
dbCAN
CAZy
CAZyme
dbCAN3
dbCAN2
updated 13 days ago by
Diego
• 0 • written 8 weeks ago by
Nishat
▴ 10
4
votes
13
replies
1.4k
views
7 follow
DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts in whole blood: is it normal to always get NS?
DEG
limma
rstudio
updated 12 days ago by
GenoMax
143k • written 4 weeks ago by
egascon
▴ 10
1
vote
3
replies
228
views
Mismatch between number of reads in fastq and mapped reads
samtools
bam
updated 12 days ago by
samuel.a.odonnell
▴ 540 • written 13 days ago by
shpak.max
▴ 50
0
votes
1
reply
129
views
Help Needed for Submitting Multiple Sequences to ENA
ENA
DATABASE
METAGENOMIC
updated 13 days ago by
GenoMax
143k • written 13 days ago by
Lucas
• 0
117,477 results • Page
5 of 2350
Recent Votes
What is the difference between eggNOG, COG and KEGG?
Comment: Interproscan
Answer: Heatmap error: 'x' must be a numeric matrix
Heatmap error: 'x' must be a numeric matrix
Pheatmap x must be numeric
A: Read Duplicates
A: What Control For Chip-Seq: Input, Igg Or Untagged Strain?
Recent Locations •
All
Israel,
1 minute ago
Poland,
3 minutes ago
United Kingdom,
4 minutes ago
Portugal,
4 minutes ago
Germany,
5 minutes ago
Spain,
5 minutes ago
Spain,
6 minutes ago
Recent Awards •
All
Popular Question
to
anikcropscience
▴ 260
Popular Question
to
Bastien Hervé
5.4k
Teacher
to
b.contreras.moreira
▴ 250
Popular Question
to
Meisam
▴ 230
Popular Question
to
devenvyas
▴ 750
Popular Question
to
sina.majidian
▴ 20
Popular Question
to
ManuelDB
▴ 80
Recent Replies
Answer: Why there are only two .fastq files in scATAC-seq raw data?
by
ATpoint
83k
I would ignore the fastq submission of NCBI for 10x data when possible. Look at https://trace.ncbi.nlm.nih.gov/Traces/index.html?view=run_b…
Answer: How to measure pairwise genetic distance in all samples of a VCF file
by
hewm2008
▴ 40
you can try this tools :https://github.com/BGI-shenzhen/VCF2Dis
Comment: How to download a file from zenodo link without leaving terminal?
by
GenoMax
143k
You have tried to log in with one of the methods mentioned (ORCID/GitHub or a local Zenodo account) and that did not work?
Comment: BCFtools not calling variant, despite adequate coverage
by
mpiersonsmela
• 0
yes, this seems to be the problem. I will try realigning to a version of hg38 without alt contigs.
Comment: Removing batch effect in time-series data
by
Álvaro
• 0
I performed a clustered heatmap and PCA for all samples and the different timepoints did not group together. However, my doubts come from a…
Comment: BCFtools not calling variant, despite adequate coverage
by
mpiersonsmela
• 0
Strange, I wonder why. Could it have anything to do with the "chr20_KI270871v1_alt"?
Comment: BCFtools not calling variant, despite adequate coverage
by
Pierre Lindenbaum
162k
your read is discarded because mapping quality=0
Answer: Removing batch effect in time-series data
by
rfran010
▴ 960
Have you performed more formal analysis? PCA, clustering, correlation, etc... If you have a time dependent batch effect, I would expect …
Comment: BCFtools not calling variant, despite adequate coverage
by
mpiersonsmela
• 0
I uploaded the sam file here if you want to take a look: https://github.com/samtools/bcftools/issues/2211
Comment: BCFtools not calling variant, despite adequate coverage
by
mpiersonsmela
• 0
The reads are not duplicates. I think the color might be due to also matching the chr20 alt contig but I'm not sure. An example line from …
Comment: How to download a file from zenodo link without leaving terminal?
by
SlowSD
• 0
Okay, are you aware of any file access setting in zenodo by changing which this can work out?
Comment: BCFtools not calling variant, despite adequate coverage
by
mpiersonsmela
• 0
The output is: chr20 63439704 G 23 ,,,,,aa,.A.A,,a,a.aA.aA FFFFFFFFkFFFFFFFFFFFFFF
Comment: How to download a file from zenodo link without leaving terminal?
by
Pierre Lindenbaum
162k
https://zenodo.org/records/11791175 > The record is publicly accessible, but files are restricted to users with access. so, no.
Comment: Problem in input data loading in Structure
by
Mensur Dlakic
★ 27k
Error messages are usually meant to be taken literally. It says that your first line has two fewer columns than the rest of your file. It p…
Comment: How to download a file from zenodo link without leaving terminal?
by
SlowSD
• 0
Still, a 6kb html file gets downloaded in the name of SRR396636.sra_1.fastq
Traffic: 2353 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6