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578
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comprehensive discussion to Phenotypic and Genotypic Matchmaking tools
phenotype genotype
2.6 years ago by Shicheng Guo ★ 9.5k
0
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1
reply
725
views
Comment: Comment: refseq stopped to update gene summary
2.6 years ago by Shicheng Guo ★ 9.5k
1
vote
1
reply
737
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Best RNA-seq downstream visualization workflow
snakemake RNAseq nextflow
2.6 years ago by Shicheng Guo ★ 9.5k
0
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0
replies
442
views
R package to integrate OMIM, Orphanet and Decipher
Decipher OMIM R Orphanet
2.6 years ago by Shicheng Guo ★ 9.5k
2
votes
3
replies
725
views
refseq stopped to update gene summary
refseq
updated 2.6 years ago by 143k • written 2.6 years ago by ★ 9.5k
1
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0
replies
770
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Job: Postdoc Position in Johnson & Johnson (Janssen Lung Cancer Initiative Project)
postdoc cancer lung
2.6 years ago by Shicheng Guo ★ 9.5k
0
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1
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9.7k
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Comment: Comment: Phasing using SHAPEIT
2.7 years ago by Shicheng Guo ★ 9.5k
1
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1
reply
705
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Genetic variation calling (SNPs) from bulk RNA-seq dataset
RNAseq SNP
updated 2.7 years ago by 101k • written 2.7 years ago by ★ 9.5k
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1
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1.7k
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Consensus genotype of MUTECT1, MUTECT2, Varscan, Muse and Somaticsniper
consensus mutation bcftools
updated 2.7 years ago by • 0 • written 5.0 years ago by ★ 9.5k
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1
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8.9k
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Comment: Comment: Phasing with SHAPEIT
2.8 years ago by Shicheng Guo ★ 9.5k
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0
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5.9k
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Comment: Comment: Human cell-surface protein databases or prediction algorithms
2.8 years ago by Shicheng Guo ★ 9.5k
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0
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4.2k
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Comment: Comment: tabix for ID column
2.8 years ago by Shicheng Guo ★ 9.5k
1
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2
replies
864
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How to download GTEx figure from USCS genome browser
UCSC GTEx
updated 2.8 years ago by ▴ 650 • written 2.9 years ago by ★ 9.5k
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0
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2.6k
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Answer: Answer: List of human protein coding genes with given name (known function?)
2.8 years ago by Shicheng Guo ★ 9.5k
1
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1
reply
713
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Human tissue expression dataset except GTEx
GTEx
updated 2.8 years ago by ▴ 70 • written 2.8 years ago by ★ 9.5k
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0
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1.9k
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Comment: Comment: tcga file id and sample id and case id
2.8 years ago by Shicheng Guo ★ 9.5k
0
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1
reply
991
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News: Databricks Runtime for Genomics (Deprecated)
Runtime Databricks Genomics
updated 2.8 years ago by 143k • written 2.8 years ago by ★ 9.5k
0
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0
replies
409
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Pan-cancer over-expressed or down-regulated gene list
TCGA expression
2.9 years ago by Shicheng Guo ★ 9.5k
0
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1
reply
1.0k
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Comment: Comment: miRAnno—network-based functional microRNA annotation
2.9 years ago by Shicheng Guo ★ 9.5k
0
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0
replies
1.1k
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Job: Senior Postdoctoral Research Fellow at Big Data Institute, University of Oxford
big postdoc genomics data
2.9 years ago by Shicheng Guo ★ 9.5k
1
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1
reply
1.2k
views
ChEMBL ID to Ensembl ID
ChEMBL Ensembl
updated 2.9 years ago by ★ 1.0k • written 2.9 years ago by ★ 9.5k
0
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0
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3.5k
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Comment: Comment: How to map ChEMBL ID to Entrez Gene?
2.9 years ago by Shicheng Guo ★ 9.5k
0
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0
replies
1.4k
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Job: Senior Scientist of Computational Genomics in Johnson & Johnson
analysis genetics genomics
2.9 years ago by Shicheng Guo ★ 9.5k
0
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0
replies
1.8k
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Comment: Comment: Error in eigen using VEGAS
2.9 years ago by Shicheng Guo ★ 9.5k
0
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0
replies
441
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GPSPROT image/network download with script
GPSPROT
3.0 years ago by Shicheng Guo ★ 9.5k
0
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0
replies
780
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Comment: Comment: Best method of integrative analysis for GWAS and differential expression data
3.0 years ago by Shicheng Guo ★ 9.5k
0
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2
replies
780
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Best method of integrative analysis for GWAS and differential expression data
GWAS
3.0 years ago by Shicheng Guo ★ 9.5k
0
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0
replies
3.1k
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Answer: Answer: GTEx eQTL data
3.1 years ago by Shicheng Guo ★ 9.5k
0
votes
2
replies
836
views
eQTL Catalogue Browser: limitation
Catalogue eQTL
3.1 years ago by Shicheng Guo ★ 9.5k
0
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0
replies
836
views
Answer: Answer: eQTL Catalogue Browser: limitation
3.1 years ago by Shicheng Guo ★ 9.5k
4
votes
2
replies
2.5k
views
Tutorial: Apply beagle5.0 to make imputation and phasing under CentOS and PBS
beagle5.0 beagle
updated 15 months ago by 44k • written 5.0 years ago by ★ 9.5k
0
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0
replies
542
views
NDEx database data download
ndex database pathway
3.1 years ago by Shicheng Guo ★ 9.5k
3
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0
replies
14k
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Answer: Answer: How to download dbSNP153 vcf files in hg19/GRCH37 version
3.1 years ago by Shicheng Guo ★ 9.5k
0
votes
1
reply
666
views
Conflict result between RNA-seq and Western-Blot
RNAseq protein
updated 3.1 years ago by ★ 2.9k • written 3.1 years ago by ★ 9.5k
0
votes
1
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563
views
Given a disease name, which R package can return relevant tissues of pathogenic?
pathogenic tissue-of-disease
3.1 years ago by Shicheng Guo ★ 9.5k
2
votes
1
reply
811
views
Phenotype Enrichment Analysis vs Gene Enrichment Analysis
enrichment gene phenotype
updated 3.1 years ago by 54k • written 3.1 years ago by ★ 9.5k
0
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0
replies
460
views
Catalog Database to TF binding site
TFBS
3.1 years ago by Shicheng Guo ★ 9.5k
1
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0
replies
958
views
Job: Computational Genomics Position is Opening at Johnson & Johnson
genetics statistical genomics
updated 12 months ago by 44k • written 3.2 years ago by ★ 9.5k
0
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1
reply
879
views
Instrumental Variables and confounder in Mendelian Randomization
Variables Mendelian randomization Instrumental
3.2 years ago by Shicheng Guo ★ 9.5k
0
votes
1
reply
747
views
Best practice to integrate OMIM data into bioinformation analysis pipeline
OMIM pipeline
3.4 years ago by Shicheng Guo ★ 9.5k
0
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0
replies
1.2k
views
Comment: C: Formula of LOEUF: loss-of-function observed/expected upper bound fraction
3.4 years ago by Shicheng Guo ★ 9.5k
1
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2
replies
1.2k
views
Formula of LOEUF: loss-of-function observed/expected upper bound fraction
LOEUF gnomad constraint Gevir plof
updated 3.5 years ago by ▴ 10 • written 3.9 years ago by ★ 9.5k
0
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0
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5.5k
views
Answer: A: Prediction Of Mutation Impact
3.5 years ago by Shicheng Guo ★ 9.5k
0
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1
reply
2.1k
views
Comment: C: How to understand Instance and Array in UKB phenotype data
3.5 years ago by Shicheng Guo ★ 9.5k
0
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0
replies
1.6k
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Answer: A: compare two GWAS results
3.6 years ago by Shicheng Guo ★ 9.5k
12
votes
4
replies
4.9k
views
Timeline for hg39 human genome?
hg39 hg38 human
updated 2.1 years ago by 162k • written 3.6 years ago by ★ 9.5k
0
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0
replies
3.5k
views
Comment: C: about inversions: head-to-head and tail-to-tail
3.6 years ago by Shicheng Guo ★ 9.5k
0
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0
replies
940
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Comment: C: Individual-level data for Million Veteran Program (MVP)
3.6 years ago by Shicheng Guo ★ 9.5k
0
votes
0
replies
602
views
Human developmental expression patterns database?
developmental RNA human
3.6 years ago by Shicheng Guo ★ 9.5k
4
votes
2
replies
940
views
Individual-level data for Million Veteran Program (MVP)
GWAS MVP
updated 3.6 years ago by ▴ 120 • written 3.6 years ago by ★ 9.5k
861 results • Page 2 of 18
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