Limit : this month
all time today this week this month this year
7 results • Page 1 of 1
Sort: Rank
Rank Views Votes Replies
5
votes
4
replies
388
views
Forum: Ideal PC configurations and operating system for bioinformatics laboratory
PC
6 days ago by Estevão • 0
0
votes
0
replies
181
views
Forum: Improvement on automatic annotation of single-cell RNA-seq data from the literature using LLM
annotation scRNA llm
15 days ago by yxwucq • 0
4
votes
2
replies
332
views
Forum: Bioinformatics: Where do I start
Sequencing
updated 22 days ago by 43k • written 22 days ago by ▴ 10
7
votes
7
replies
1.7k
views
Forum: Bioinformatician who was retaliated against after reporting discriminatory harassment - Please help me navigate getting out of the situation I'm in
Career advice
updated 22 days ago by ★ 2.5k • written 23 days ago by • 0
1
vote
2
replies
371
views
Forum: VCF bulk handling
bcftools SnpEff WGS VEP VCF
21 days ago by Javier • 0
103
votes
42
replies
31k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 29 days ago by 22k • written 10.5 years ago by ★ 3.6k
25
votes
11
replies
3.8k
views
6 follow
Forum: Site Use Guidelines
meta biostars Guidelines
updated 14 days ago by 43k • written 14.6 years ago by 100k
7 results • Page 1 of 1
Recent Votes
Answer: Best way to compare two samples in a VCF file
A: How Do Heterozygotes And Somatic Mutations Manifest In Sequencing Projects
How Do Heterozygotes And Somatic Mutations Manifest In Sequencing Projects
A: How to download genome assemblies from NCBI with a list of GCA identifiers?
How to download genome assemblies from NCBI with a list of GCA identifiers?
Answer: Why is RNA-Seq library size not constant among samples?
Answer: TFs and Gene databases
Recent Locations • All
Karolinska Institutet, Sweden, 2 minutes ago
United States, 3 minutes ago
USA, 4 minutes ago
United States, 4 minutes ago
United States, 5 minutes ago
Spain, 6 minutes ago
United Kingdom, 7 minutes ago
Recent Awards • All
Popular Question to nhaus ▴ 350
Popular Question to Chris ▴ 280
Popular Question to chenl ▴ 10
Popular Question to User000 ▴ 690
Scholar to analyst ▴ 50
Popular Question to ingerslev • 0
Scholar to ATpoint 82k
Recent Replies
Answer: How to compare compare two Sam files to check mapping by DavidStreid ▴ 90
Curious if others have also benefited from Picard's [CompareSAMs][1] tool. Seems to do exactly what Madhu has requested. If the headers …
Answer: How/where can I get fungal mitogenome data for analysis? by alex.zaccaron ▴ 410
The best repository is probably NCBI Organelle Resources. You can search by taxonomy and download their mt genomes. Check it out for fungi…
Answer: How/where can I get fungal mitogenome data for analysis? by GenoMax 142k
Good place to start looking: https://www.ncbi.nlm.nih.gov/genome/organelle/ Mitochondrial genomes may also be included in full genomes so …
Comment: Correlating Bulk Differential Expression with quantitative by Nicholas • 0
Thank you! I will give it a shot
Answer: How can I analyze normalized expression data? by Bastien Hervé 5.3k
This has been issued a dozen times before. Have a look at Limma package. https://support.bioconductor.org/p/126817/ https://support.bioco…
Comment: Error in plotting PCA plot in seurat by Bastien Hervé 5.3k
Without your code, it is impossible to make any statement. Please provide the code generating that issue. By googling, here is a [similar …
Comment: A question about reference genome for creating the consensus sequence by me • 0
Hi, thanks for your information. I am a bit confused now. Does this mean the cram file already contained reference genome information? I in…
Comment: PseudobulkExpression.Seurat error by Bastien Hervé 5.3k
> None of the requested assays are present in the object Does the assay `originalexp` exist in your object `seurat_from_cds` ?
Comment: identifying transgene insertion site in WGS by Cameron.walker9900 • 0
When calling for SVs using gridds, should I use the reference genome that I added my transgene to, or should I use the unedited reference?
Comment: Question regarding WGCNA by deepak • 0
Thank for the reply. I am running this code: # set a set of soft-thresholding powers powers = c(c(1:20), seq(from = 22, to=30, by=2)) # Ca…
Comment: RNA seq analysis by prifa • 0
thank you for your reply Zepper, a bit clarification, I took all the samples from SRA data table, but yes from different lab and also diffe…
Comment: RNA seq analysis by Matthias Zepper 4.6k
That you have a varying number of replicates is not ideal ([see here why][1]), but manageable. See for example the [Specific experimental d…
Comment: Percentage coverage of reference genome by de novo genome by Joe 21k
OK, in that case it should be even easier as its just a single pairwise alignment, so the same advice holds.
Comment: FarmCPU - how to explain the reported 'effect'? by chloek88 • 0
Hi Phillip, Did you ever figure out the answer to this? I also have rMVP results with a column 'effect', values ranging from ~-1.4 to +1…
Comment: Soft-clipping read ends based on read group by chenl ▴ 10
Hi, Can you please share how did you clip both ends of the reads with ClipReads? Clipping form the start with `-CT "1-3"` for instance wor…
Traffic: 2685 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6